DRSC/TRiP Functional Genomics Resources

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Protein Alignment 18w and chp

DIOPT Version :10

Sequence 1:NP_476814.1 Gene:18w / 37277 FlyBaseID:FBgn0287775 Length:1385 Species:Drosophila melanogaster
Sequence 2:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster


Alignment Length:1251 Identity:293/1251 - (23%)
Similarity:449/1251 - (35%) Gaps:434/1251 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 YGLTTMDIRCSVRALESGTGTPLDLQVAE-------AAGRLDLQCSQELLHAS-----ELAPGLF 86
            |...|.::.|:  ..:|.|    ||.:..       |..|:..|....:||..     |:.| .|
  Fly    41 YPPCTYNVMCT--CSKSST----DLGIVHCKNVPFPALPRMVNQSKVFMLHMENTGLREIEP-YF 98

  Fly    87 RQLQKLSELRIDACKLQRVPPNAFEGL-MSLKRLTLESHNAVWGPGKTLELHGQSFQGLKELSEL 150
            .|...:..|:|....|..:|.:||.|| .||..|.|..::.|       |:..:|.:.|::|..|
  Fly    99 LQSTGMYRLKISGNHLTEIPDDAFTGLERSLWELILPQNDLV-------EIPSKSLRHLQKLRHL 156

  Fly   151 HLGDNNIRQLPEGVWCSM-PSLQLLNLTQNRIRSAEFLGFSEKLCAGSALSNANGAVSGGSELQT 214
            .||.|:|..:....:..: .|||.|.|.:|              |....:|:   :.||...|:|
  Fly   157 DLGYNHITHIQHDSFRGLEDSLQTLILREN--------------CISQLMSH---SFSGLLILET 204

  Fly   215 LDVSFNELRSLPDAWGASRLRRLQTLSLQHNNISTLAPNALAGLSSLRVLNISYNHLVSLPS--- 276
            ||:|.|.|..:........:.||..|.|..|.:|.:..:||..|.|||.|:||:|.:.||..   
  Fly   205 LDLSGNNLFEIDPNVFVDGMPRLTRLLLTDNILSEIPYDALGPLKSLRTLDISHNVIWSLSGNET 269

  Fly   277 -EAFAGNK-ELRELHLQGNDLYELPKGL----------------LHRLEQ--------------- 308
             |..|..| .|..|||:.|.:..||...                :|.|.:               
  Fly   270 YEIKASTKLNLDNLHLEYNHIEVLPPNSFKYFDTVNRTFFDGNPIHTLREDAFKPARIREIYMRY 334

  Fly   309 -----------------LLVLDLSGNQLTS-HHV--------------DN--------STFAGL- 332
                             |.:||||||.||. ||.              ||        .||..: 
  Fly   335 CGLTNISPVAFDSLVNSLQILDLSGNNLTKLHHKLFNNFDVLRVISMRDNKIKIQKPTETFNAVH 399

  Fly   333 IRLIVLNLSNN-------------------ALTRIGSKT-------------------------- 352
            ..|:.|:||.:                   :::|:||.:                          
  Fly   400 YTLLKLDLSGDRNDPTNLQTLRKMRNMRSLSISRLGSSSVGPEDFKDFGVELEDLQITRASLSGI 464

  Fly   353 ----FKELYFLQILDMRNNSIGHIEEGAF--------------------LP------LYNLHTLN 387
                ||.:..|:.||...|.|..||..||                    ||      |.:|..|:
  Fly   465 QSHAFKHVRGLKRLDFSENGISSIENDAFHEIGHSLISLKMSHGYSGSALPAEPLRHLTSLQELD 529

  Fly   388 LAENRLHTLDNRIFNGLYVLTKLTLNNNLVSIVESQAFRN--CSDLKELDLSSNQLTEVPE-AVQ 449
            .:.|.:.::.:..|:.|..|..|.|::|.:..|....|:.  .|.|:|:.|..|.||.:.: ...
  Fly   530 FSNNHISSMSDTSFHFLKNLRLLELHDNRIEQVLKGTFQGDIHSKLEEISLRFNHLTSISQHTFF 594

  Fly   450 DLSMLKTLDLGENQISEFKNNTFRNLNQLTGLRLIDNRIGNITVGMFQDLPRLSVLNLAKNRIQS 514
            ||..|:.|.|.:|:|.:.:...|.||::|..|.|..|:|.|:....||:||:|.:|::|.|::.:
  Fly   595 DLEALRKLHLDDNKIDKIERRAFMNLDELEYLSLRGNKINNLADESFQNLPKLEILDMAFNQLPN 659

  Fly   515 IERGAFDKNTEIEAIRLDKNFLTDINGIFATLASLLWLNLSENHLVWFDY-----------AFIP 568
            .....||:                    ..||::|. :|:|.|.:....|           ....
  Fly   660 FNFDYFDQ--------------------VGTLSNLN-VNVSHNQIRQLMYNSSWSGRNEHGGMYH 703

  Fly   569 SNLKWLDIHGNYIEALGNYYKLQEEIRVT------------------------TLDASHNRITEI 609
            ||:|.||:..|.|..:...|....||.:|                        .||.|:|.|.|:
  Fly   704 SNIKILDLSHNNISIIHPGYFRPAEISLTHLHLGYNSLMNTTRDVFGNMPHLQWLDLSYNWIHEL 768

  Fly   610 GAMSVPNS--IELLFINNNIIGQIQANTFVDKTRLARVDLYANVLSKISLNALRVAPVSAEKPVP 672
            ...:..|:  ::|:|..:|.:..|..:.|.....|..||        .|.|.||..|.:.     
  Fly   769 DFDAFKNTKQLQLVFFGHNYLSDIPQDIFKPVQGLRIVD--------FSHNHLRGLPDNL----- 820

  Fly   673 EFYLGGNPFECDCSMEWLQRINNLTTRQHPHVVDLGNIECLMPHSRSAPLRPLASLSASDFVCKY 737
             ||.||        ||.|...:|:..:              :|   |:.|..||:|:.       
  Fly   821 -FYNGG--------MEKLDVSHNMMLK--------------IP---SSSLSSLAALTL------- 852

  Fly   738 ESHCPPTCHCCEYEQCECEVICPGN-CSCFHDATWATNIVDCGRQDLAALPNRIPQ----DVSDL 797
                             ||:....| .|..|.            .||:   |:...    |:|..
  Fly   853 -----------------CELHLSNNFISTIHS------------MDLS---NKFRSLRYLDISYN 885

  Fly   798 YL----DG--NNMPELEVGHLTGRRNLRAL---YLNASNLMT---LQNGSLA------------- 837
            ||    |.  ..||:|.|..|:..|:|:.:   ::...|.:.   |:|.||:             
  Fly   886 YLLRIDDAVFATMPKLAVLDLSHNRDLKVMDKSFMGLENSLIKLGLENISLSTVPEIRLKYLREF 950

  Fly   838 ----------------QLVNLRVLHLENNKLTALEGTEFRSLGLLRELYLHNNMLTHISNATFEP 886
                            .:.|||:|.|.||.||.:. ...::|..||.|.|..|.:|.::|.:|:.
  Fly   951 RLGYNELPSIPQELAHNMSNLRMLDLSNNDLTNVP-LMTQALPHLRRLMLSGNPITSLNNNSFDG 1014

  Fly   887 L-VSLEVLRLDNNR--------LSSLPHLQ------YRHSLQGLTLG---------RNAWSCRCQ 927
            : ..||:|.:.|.|        |.|||||:      |.| |:...:.         |..|....|
  Fly  1015 VNEDLEMLDISNFRLHYFEYGCLDSLPHLRSLKLTAYSH-LEHFNIPHLLRHHYNIRQLWIEAPQ 1078

  Fly   928 QLRELAQFVSDNAMVVRDAHDIYCLDAG----IKRELE--LIGNLAN----GPDCSDLLDASASN 982
            ....:.:..|.      ...::..|..|    ::||:|  |...|.|    ||..::|       
  Fly  1079 PFTRIVKKGSG------PTQEMQTLQLGNPTDLQREMEGHLPSKLTNITFSGPQFTNL------- 1130

  Fly   983 ISSSQDLAGGYRLPLL 998
               ::.:..|.|.|.|
  Fly  1131 ---NERILRGMRSPYL 1143

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
18wNP_476814.1 leucine-rich repeat 66..91 CDD:275380 8/29 (28%)
leucine-rich repeat 92..115 CDD:275380 8/23 (35%)
LRR_8 115..181 CDD:404697 20/66 (30%)
leucine-rich repeat 116..146 CDD:275380 7/29 (24%)
leucine-rich repeat 147..170 CDD:275380 6/23 (26%)
leucine-rich repeat 171..201 CDD:275380 6/29 (21%)
LRR 210..592 CDD:443914 132/547 (24%)
leucine-rich repeat 212..236 CDD:275380 7/23 (30%)
leucine-rich repeat 237..260 CDD:275380 8/22 (36%)
leucine-rich repeat 261..284 CDD:275380 11/27 (41%)
leucine-rich repeat 285..308 CDD:275380 9/38 (24%)
leucine-rich repeat 309..334 CDD:275380 15/48 (31%)
leucine-rich repeat 335..358 CDD:275380 9/71 (13%)
leucine-rich repeat 359..382 CDD:275380 12/48 (25%)
leucine-rich repeat 383..406 CDD:275380 5/22 (23%)
leucine-rich repeat 407..430 CDD:275380 6/24 (25%)
leucine-rich repeat 431..451 CDD:275380 6/20 (30%)
leucine-rich repeat 454..477 CDD:275380 8/22 (36%)
leucine-rich repeat 478..499 CDD:275380 8/20 (40%)
leucine-rich repeat 502..525 CDD:275380 6/22 (27%)
leucine-rich repeat 526..548 CDD:275380 2/21 (10%)
leucine-rich repeat 590..617 CDD:275380 9/50 (18%)
leucine-rich repeat 618..641 CDD:275380 5/22 (23%)
leucine-rich repeat 642..689 CDD:275380 13/46 (28%)
LRRCT 679..736 CDD:214507 10/56 (18%)
LRR <775..>920 CDD:443914 52/213 (24%)
leucine-rich repeat 775..796 CDD:275380 4/24 (17%)
leucine-rich repeat 797..817 CDD:275380 8/25 (32%)
leucine-rich repeat 818..841 CDD:275380 6/57 (11%)
leucine-rich repeat 842..865 CDD:275380 9/22 (41%)
leucine-rich repeat 866..889 CDD:275380 8/23 (35%)
leucine-rich repeat 890..911 CDD:275380 12/34 (35%)
TIR 1045..1183 CDD:214587
chpNP_001263137.1 LRR <84..320 CDD:443914 75/260 (29%)
leucine-rich repeat 84..103 CDD:275380 6/19 (32%)
leucine-rich repeat 104..128 CDD:275380 8/23 (35%)
leucine-rich repeat 129..152 CDD:275380 7/29 (24%)
leucine-rich repeat 153..177 CDD:275380 6/23 (26%)
leucine-rich repeat 178..201 CDD:275380 9/39 (23%)
leucine-rich repeat 202..226 CDD:275380 7/23 (30%)
leucine-rich repeat 227..250 CDD:275380 8/22 (36%)
leucine-rich repeat 251..279 CDD:275380 11/27 (41%)
leucine-rich repeat 280..326 CDD:275380 9/45 (20%)
leucine-rich repeat 327..348 CDD:275380 0/20 (0%)
leucine-rich repeat 352..375 CDD:275380 11/22 (50%)
PPP1R42 355..564 CDD:455733 45/208 (22%)
leucine-rich repeat 376..401 CDD:275380 4/24 (17%)
leucine-rich repeat 426..450 CDD:275378 3/23 (13%)
leucine-rich repeat 451..474 CDD:275380 2/22 (9%)
LRR_8 473..559 CDD:404697 21/85 (25%)
leucine-rich repeat 475..524 CDD:275380 12/48 (25%)
leucine-rich repeat 500..519 CDD:275380 2/18 (11%)
leucine-rich repeat 525..548 CDD:275380 5/22 (23%)
LRR <540..>834 CDD:443914 86/336 (26%)
leucine-rich repeat 549..574 CDD:275380 6/24 (25%)
leucine-rich repeat 575..598 CDD:275380 8/22 (36%)
leucine-rich repeat 599..622 CDD:275380 8/22 (36%)
leucine-rich repeat 623..646 CDD:275380 9/22 (41%)
leucine-rich repeat 647..730 CDD:275380 22/103 (21%)
leucine-rich repeat 648..673 CDD:275380 7/44 (16%)
leucine-rich repeat 674..705 CDD:275380 5/31 (16%)
LRR <730..1081 CDD:443914 95/430 (22%)
leucine-rich repeat 731..754 CDD:275380 1/22 (5%)
leucine-rich repeat 755..778 CDD:275380 7/22 (32%)
leucine-rich repeat 779..802 CDD:275380 5/22 (23%)
leucine-rich repeat 803..823 CDD:275380 9/33 (27%)
leucine-rich repeat 852..876 CDD:275380 8/62 (13%)
leucine-rich repeat 877..900 CDD:275380 6/22 (27%)
leucine-rich repeat 901..925 CDD:275380 5/23 (22%)
leucine-rich repeat 926..946 CDD:275380 4/19 (21%)
leucine-rich repeat 947..970 CDD:275380 0/22 (0%)
leucine-rich repeat 971..993 CDD:275380 9/22 (41%)
leucine-rich repeat 994..1014 CDD:275380 8/19 (42%)
leucine-rich repeat 1019..1042 CDD:275380 8/22 (36%)
Blue background indicates that the domain is not in the aligned region.

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