DRSC/TRiP Functional Genomics Resources

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Protein Alignment 18w and CG18249

DIOPT Version :10

Sequence 1:NP_476814.1 Gene:18w / 37277 FlyBaseID:FBgn0287775 Length:1385 Species:Drosophila melanogaster
Sequence 2:NP_001163549.1 Gene:CG18249 / 40964 FlyBaseID:FBgn0037553 Length:559 Species:Drosophila melanogaster


Alignment Length:638 Identity:143/638 - (22%)
Similarity:235/638 - (36%) Gaps:211/638 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 GLTTMDIRCSVRALESGTGTPLDLQVAEAAGRLDL--QCSQELLHASE------LAPGLFRQLQK 91
            |||..|.                |.|.:|:||.:|  .|.......|:      ..|.|     :
  Fly    13 GLTVSDA----------------LAVYDASGRFNLSASCPDSFCSLSDRPVAYSATPAL-----Q 56

  Fly    92 LSELRIDACKLQRVPPNAFEGLMSLKRLTLESHNAVWGPGKTLELHGQSFQGLKELSELHLGDNN 156
            |.||.:..|..|.:.....:....|:.|.:.:       ..|..:..:|.:.::.|:.|.:...:
  Fly    57 LRELHLRNCSRQSITWLVLQLTPGLRTLVIRN-------CATYHISKESLRPVENLTSLQMQGTS 114

  Fly   157 IRQLPEGVWCSMPSLQLLNLTQNRIRSAEFLGFSEKLCAGSALSNANGAVSGGSELQTLDVSFNE 221
            :..|.:.::.::|.|::|.|:||.|.:.....|.                               
  Fly   115 LGVLRDQIFNAVPRLEILQLSQNFIHTVHVAAFQ------------------------------- 148

  Fly   222 LRSLPDAWGASRLRRLQTLSLQHNNISTLAPNALAGLSSLRVLNISYNHLVSLPSEAFAGNKELR 286
                    |.|:||   .|.||.|.|:.:..:.|..|..|..|::|.|.|.:||...||.||:|:
  Fly   149 --------GLSKLR---LLGLQGNAIAEILSSTLDPLMELVHLDLSRNELTTLPQNIFAKNKKLQ 202

  Fly   287 ELHLQGNDLYELPKGLLHRLEQLLVLDLSGNQLTSHHVDNSTFAGLIRLIVLNLSNNALTRIGSK 351
            .|.|.||.|..|...:|..|..|.:|||.             .|..:.::.|||:|.....:...
  Fly   203 TLLLNGNPLRILMPDVLGSLPNLRLLDLG-------------HAAELEVMTLNLTNVQNLVLEGS 254

  Fly   352 TFKELY----FLQILDMRNNSIGHIEEGAFLPLYNLHTLNLAENRLHTLDNRIFNGLYVLTKLTL 412
            :...|.    |:: |...||.:.|::.|        :..::.|..||   ..:.||         
  Fly   255 SLSSLVINGGFIK-LQAGNNELNHLQVG--------NKSSVIEMDLH---GNLLNG--------- 298

  Fly   413 NNNLVSIVESQAFRNCSDLKELDLSSNQLTEVPEAVQDLSMLKTLDLGENQISEFKNNTFRNLNQ 477
             |:..:::     |...:|:.||||.|::..:|:....|....|.:|                  
  Fly   299 -NDTAALL-----RGMWNLQRLDLSKNRIEALPQHGSGLDASGTQEL------------------ 339

  Fly   478 LTGLRLIDNRIGNITVGMFQDLPRLSVLNLAKNRIQSIERGAFDKNTEIEAIRL--DKNFLTDIN 540
                 ||              ||.|..||||.|::                :||  :...|:   
  Fly   340 -----LI--------------LPSLKFLNLANNQL----------------VRLPPESPILS--- 366

  Fly   541 GIFATLASLLWLNLSENHLVWFDYAFIP--SNLKWLDIHGNYIEALGNYYKLQEEIRVTTLDASH 603
                  :.|.:|:||.|.::..|.|.:.  |.||.|.:.||.:..: ||.||.||         |
  Fly   367 ------SRLSYLDLSHNLMLTLDVAILRSLSVLKGLYVEGNRLNTI-NYQKLHEE---------H 415

  Fly   604 NRITEIGAMSVP------NSIELLFINNNIIGQIQA---NTFVDKTRLARVDL 647
            ..::|:|....|      ..:.|.|.:..:  .:||   |..::|:  :|||:
  Fly   416 PDLSELGLHDNPWSSGLYRKMFLYFTDRGV--HLQARPQNRVLNKS--SRVDI 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
18wNP_476814.1 leucine-rich repeat 66..91 CDD:275380 6/32 (19%)
leucine-rich repeat 92..115 CDD:275380 5/22 (23%)
LRR_8 115..181 CDD:404697 13/65 (20%)
leucine-rich repeat 116..146 CDD:275380 4/29 (14%)
leucine-rich repeat 147..170 CDD:275380 3/22 (14%)
leucine-rich repeat 171..201 CDD:275380 7/29 (24%)
LRR 210..592 CDD:443914 94/389 (24%)
leucine-rich repeat 212..236 CDD:275380 3/23 (13%)
leucine-rich repeat 237..260 CDD:275380 7/22 (32%)
leucine-rich repeat 261..284 CDD:275380 10/22 (45%)
leucine-rich repeat 285..308 CDD:275380 9/22 (41%)
leucine-rich repeat 309..334 CDD:275380 5/24 (21%)
leucine-rich repeat 335..358 CDD:275380 5/26 (19%)
leucine-rich repeat 359..382 CDD:275380 5/22 (23%)
leucine-rich repeat 383..406 CDD:275380 5/22 (23%)
leucine-rich repeat 407..430 CDD:275380 2/22 (9%)
leucine-rich repeat 431..451 CDD:275380 7/19 (37%)
leucine-rich repeat 454..477 CDD:275380 2/22 (9%)
leucine-rich repeat 478..499 CDD:275380 2/20 (10%)
leucine-rich repeat 502..525 CDD:275380 6/22 (27%)
leucine-rich repeat 526..548 CDD:275380 3/23 (13%)
leucine-rich repeat 590..617 CDD:275380 7/32 (22%)
leucine-rich repeat 618..641 CDD:275380 6/25 (24%)
leucine-rich repeat 642..689 CDD:275380 3/6 (50%)
LRRCT 679..736 CDD:214507
LRR <775..>920 CDD:443914
leucine-rich repeat 775..796 CDD:275380
leucine-rich repeat 797..817 CDD:275380
leucine-rich repeat 818..841 CDD:275380
leucine-rich repeat 842..865 CDD:275380
leucine-rich repeat 866..889 CDD:275380
leucine-rich repeat 890..911 CDD:275380
TIR 1045..1183 CDD:214587
CG18249NP_001163549.1 leucine-rich repeat 57..80 CDD:275380 5/22 (23%)
LRR 105..433 CDD:443914 111/481 (23%)
leucine-rich repeat 105..128 CDD:275380 3/22 (14%)
leucine-rich repeat 129..152 CDD:275380 8/61 (13%)
leucine-rich repeat 153..176 CDD:275380 9/25 (36%)
leucine-rich repeat 177..200 CDD:275380 10/22 (45%)
leucine-rich repeat 201..224 CDD:275380 9/22 (41%)
leucine-rich repeat 225..258 CDD:275380 9/45 (20%)
leucine-rich repeat 259..310 CDD:275380 14/77 (18%)
leucine-rich repeat 311..344 CDD:275380 13/69 (19%)
leucine-rich repeat 345..368 CDD:275380 9/47 (19%)
leucine-rich repeat 369..390 CDD:275380 7/20 (35%)
leucine-rich repeat 393..417 CDD:275380 12/33 (36%)
Blue background indicates that the domain is not in the aligned region.

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