DRSC/TRiP Functional Genomics Resources

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Protein Alignment 18w and tlr4ba

DIOPT Version :10

Sequence 1:NP_476814.1 Gene:18w / 37277 FlyBaseID:FBgn0287775 Length:1385 Species:Drosophila melanogaster
Sequence 2:XP_009305503.2 Gene:tlr4ba / 403131 ZFINID:ZDB-GENE-040219-8 Length:824 Species:Danio rerio


Alignment Length:1129 Identity:236/1129 - (20%)
Similarity:374/1129 - (33%) Gaps:467/1129 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 RSAEFLGFSEKLCAGSALSNANGAVSGGSELQTLDVSFNELRSLPDAWGASRLRRLQTLSLQHNN 246
            |..|.|.:|   |.|..||:...::.  |.:||||.|||....|.                    
Zfish    28 RIIENLHYS---CMGRNLSSIPSSIP--SSVQTLDFSFNFFLQLK-------------------- 67

  Fly   247 ISTLAPNALAGLSSLRVLNISYNHLVSLPSEAFAGNKELRELHLQGNDLYELPKG---LLHRLEQ 308
             .|:.|    .||.||||::|..|:..:.::||...|.|..|.|.||.:.....|   .|:.|::
Zfish    68 -KTIFP----VLSFLRVLDLSRCHIRQIENDAFYNVKNLTTLFLTGNPIIYFAPGCLNTLYNLQR 127

  Fly   309 LLVLDLSGNQLTSHHVDNSTFAGLIRLIVLNLSNNALTRIG----SKTFKELYFLQILDMRNNSI 369
            |:::|: |.:....:::|     |.:|..||:..|.:..:.    ..|||:   ..:||:..|:|
Zfish   128 LVLVDI-GLESLQLNINN-----LTKLQELNVGTNYIQSMTLPPFMTTFKD---FSLLDLHANNI 183

  Fly   370 G---------------------------HIEEGAFLPLY---------------------NLHTL 386
            .                           |||.|||..:|                     .||.|
Zfish   184 SIIRTDHTVVLREIGRNMTLILTWNPLLHIEPGAFKDVYLRQLDIRSAFVSFSAQKAALKALHGL 248

  Fly   387 NL---------AENRLHTLDNRIFNGL----------YVL----------------TKLTLNNNL 416
            |:         .:|..|.:||.:.:||          |||                |::|:....
Zfish   249 NVKRLIFGKYREDNGFHFVDNDVLDGLCCFNFQEVSYYVLESAKTTIAIFRCMINATRITVKGGN 313

  Fly   417 VSIVESQAFRNCSDLKELDLSSNQLTEVP-EAVQDLSMLKTLDLGENQISEFKNNTFRNLNQLTG 480
            :..:|:..|..   .|||.|.:|.|..:| :.:..|..|:.|::..|....|. ..|.:|.:|..
Zfish   314 IFKMETVHFHK---TKELYLINNGLGTLPTKQLSHLHTLEKLEITHNSEPIFA-EPFTDLPKLQY 374

  Fly   481 LRLIDN--RIGNITVGMFQDLPRLSVLNLAKNRIQSIERGAFDKNTEIEAIRLDKNFLTDINGIF 543
            :.|.||  :|.:....:....|:::.|||:.|...|::.|.|:                      
Zfish   375 VDLSDNQLKIKHCCSTLLSGTPQINYLNLSLNSEISVDVGGFE---------------------- 417

  Fly   544 ATLASLLWLNLSENHLVWFDYAFIPSNLKWLDIHGNYIEALGNYYKLQEEIRVTTLDASHNRITE 608
             .|.||..|:.|...:|...|..:.||||                      .:..||.|::.:| 
Zfish   418 -GLDSLEILDFSYTRVVRIGYLSVLSNLK----------------------NLRYLDVSYSSVT- 458

  Fly   609 IGAMSVPNSIELLFINNNIIGQIQANTFVDKTRLARVDLYANV---LSKISLNALRVAPVSAEKP 670
                                                   ::|:   |...|||.|::|       
Zfish   459 ---------------------------------------FSNIFCFLGLSSLNVLKMA------- 477

  Fly   671 VPEFYLGGNPFECDCSMEWLQRINNLTTRQHPHVVDLGNIECLMPHSRSAPLRPLASLSASDFVC 735
                   ||.|:                         ||                        |.
Zfish   478 -------GNNFQ-------------------------GN------------------------VA 486

  Fly   736 KYESHCPPTCHCCEYEQCECEVICPGNCSCFHDATWATNIVDCGRQDLAALPNRIPQDVSDLYLD 800
            ||..                                                             
Zfish   487 KYVF------------------------------------------------------------- 490

  Fly   801 GNNMPELEVGHLTGRRNLRALYLNASNLMTLQNGSLAQLVNLRVLHLENNKLTALEGTEFRSLGL 865
             ||:..||  ||.         ::..:|:.|...|...|..||.|:::.|.|..::.....:|..
Zfish   491 -NNLTLLE--HLD---------MSFCHLVELHTSSFKYLQRLRHLNVKGNYLIKIDFLTHPNLKQ 543

  Fly   866 LRELYLHNNMLTHISNATFEPLVSLEVLRLDNNRLSSLPHLQYRHSLQGLTLGRNAWSCRCQQLR 930
            |...|:..|.:|.|      ||          :.|.:||     .:|....|..|...|.|.| .
Zfish   544 LTSFYVEKNSITAI------PL----------HVLQNLP-----MNLSEFDLSFNPIDCSCSQ-T 586

  Fly   931 ELAQFVSDNAMVVRDAHDIYCLDAGIKRELELIGNLANGPDCSDLLDASASNISSSQDL------ 989
            :...::.:|..|::...:|.|                             ..||.:.|.      
Zfish   587 DFMLWIINNQRVLKQPENILC-----------------------------KTISPNSDFRVTDFD 622

  Fly   990 ----AGGYRLPLLAAVLVLIFLVVVLIIVFVFRESVR-MWL----FAHYGVRVCEPRFEDAGKLY 1045
                ....:|.::..|..::|:||:.|:|:.|:..:| .|:    :...|.:.|.         |
Zfish   623 IDHCVYKKKLIIVLPVFCVVFIVVLSILVYRFQFYLRYFWILLRGYRSPGQQECS---------Y 678

  Fly  1046 DAIILHSEKDYEFVCRNIAAELEHGRPPFRLCIQQRDLPPQ---ASHLQLVEGARASRKIILVLT 1107
            ||.::.|..|..:|...:...||:|.||.:||:..||....   ||:: :.||...|||||:|::
Zfish   679 DAFVIFSSYDEAWVMNELMENLENGVPPIQLCLHMRDFQAGKSIASNI-IDEGIMGSRKIIVVVS 742

  Fly  1108 RNLLATEWNRIEFRNAFHESLRGLAQKLVIIEETS--VSAEAEDVAE--------LSPYLKSVPS 1162
            ::.:.:.|.|.||.         |||...::|..:  :....|||||        |..:||   .
Zfish   743 QHFIDSSWCRFEFE---------LAQSRFLMERNANIIIIILEDVAERKTKKVIGLHKHLK---K 795

  Fly  1163 NRLLTCDR------YFWEKLRYAI 1180
            |..|...|      .||.:||.||
Zfish   796 NTYLKWSRDPLSNMRFWIRLRKAI 819

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
18wNP_476814.1 leucine-rich repeat 66..91 CDD:275380
leucine-rich repeat 92..115 CDD:275380
LRR_8 115..181 CDD:404697
leucine-rich repeat 116..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..201 CDD:275380 7/18 (39%)
LRR 210..592 CDD:443914 108/474 (23%)
leucine-rich repeat 212..236 CDD:275380 8/23 (35%)
leucine-rich repeat 237..260 CDD:275380 3/22 (14%)
leucine-rich repeat 261..284 CDD:275380 8/22 (36%)
leucine-rich repeat 285..308 CDD:275380 8/25 (32%)
leucine-rich repeat 309..334 CDD:275380 5/24 (21%)
leucine-rich repeat 335..358 CDD:275380 7/26 (27%)
leucine-rich repeat 359..382 CDD:275380 11/70 (16%)
leucine-rich repeat 383..406 CDD:275380 10/41 (24%)
leucine-rich repeat 407..430 CDD:275380 5/38 (13%)
leucine-rich repeat 431..451 CDD:275380 7/20 (35%)
leucine-rich repeat 454..477 CDD:275380 6/22 (27%)
leucine-rich repeat 478..499 CDD:275380 5/22 (23%)
leucine-rich repeat 502..525 CDD:275380 7/22 (32%)
leucine-rich repeat 526..548 CDD:275380 1/21 (5%)
leucine-rich repeat 590..617 CDD:275380 4/26 (15%)
leucine-rich repeat 618..641 CDD:275380 0/22 (0%)
leucine-rich repeat 642..689 CDD:275380 10/49 (20%)
LRRCT 679..736 CDD:214507 5/56 (9%)
LRR <775..>920 CDD:443914 28/144 (19%)
leucine-rich repeat 775..796 CDD:275380 0/20 (0%)
leucine-rich repeat 797..817 CDD:275380 6/19 (32%)
leucine-rich repeat 818..841 CDD:275380 4/22 (18%)
leucine-rich repeat 842..865 CDD:275380 6/22 (27%)
leucine-rich repeat 866..889 CDD:275380 7/22 (32%)
leucine-rich repeat 890..911 CDD:275380 3/20 (15%)
TIR 1045..1183 CDD:214587 50/155 (32%)
tlr4baXP_009305503.2 None
Blue background indicates that the domain is not in the aligned region.

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