DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment 18w and CG4168

DIOPT Version :9

Sequence 1:NP_476814.1 Gene:18w / 37277 FlyBaseID:FBgn0004364 Length:1385 Species:Drosophila melanogaster
Sequence 2:NP_001285953.1 Gene:CG4168 / 34889 FlyBaseID:FBgn0028888 Length:1330 Species:Drosophila melanogaster


Alignment Length:1113 Identity:282/1113 - (25%)
Similarity:442/1113 - (39%) Gaps:296/1113 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 RLDL--QCSQEL-------------LHASELAPGLFRQLQK-------LSELRIDACKLQRVPPN 108
            ||||  .|.:.|             |.|..|......||.:       ::.|.:....:.||.|:
  Fly   341 RLDLGQNCIENLESDYFQQNYSDVHLRALNLEQNFVTQLPEAVFKATGIAHLVLAFNAISRVHPS 405

  Fly   109 AFEGLM-SLKRLTLESHNAVWGPG-------------------------------KTLELHGQSF 141
            |||||. :|:.|.||.:.....|.                               :.|.|.|.:|
  Fly   406 AFEGLTETLEYLDLERNRLTTVPVALSSLHHLKYLYLTSNQISQLNNLPSFTENLRVLSLSGNNF 470

  Fly   142 Q-----GLK---ELSELHLGDNNIRQLPEGV-----WCSMPSLQLLNLTQNRIRSAEFLGFSEKL 193
            .     |||   :||.|::|.|:|..:|||:     |.|  :||.:.|..|:|.....       
  Fly   471 SMIPVLGLKNYTQLSYLNMGYNSITDIPEGIFAVDSWGS--NLQTILLRNNKITHLHL------- 526

  Fly   194 CAGSALSNANGAVSGGSELQTLDVSFNELRSLPDAWGASRLRRLQTLSLQH-----NNISTLAP- 252
                      |:.:|..::|.:.:|||::.........:..|.|:.|.|..     .::.:|.| 
  Fly   527 ----------GSFAGLEQIQEISLSFNDITIHHPLVFENVSRTLKILELSFAVFPARSLESLDPL 581

  Fly   253 NALAGLSSLRVLNISYNHLVSLPSEAFAGNKELRELHLQGNDLYELPKGLL----HRLEQLLVLD 313
            :||..||.|..|.:..|:|..:.:|:||..:||..::|..|.|..||:||.    |  ..|:.:|
  Fly   582 DALLPLSQLIWLGLDNNNLKQVSNESFAQMRELSYINLSFNQLKTLPRGLFQSDAH--SHLVEID 644

  Fly   314 LSGNQLTSHHVDNSTFAGLIRLIVLNLSNNALTRIGSKTFKELYFLQILDMRNNSIGHIEEGAFL 378
            ||.|.|  ..::..||..|..|..|||.:|.|..|....|..|.||:.||:..|.:.:|..|||.
  Fly   645 LSYNGL--ERLEAQTFHSLGDLQTLNLQSNRLRTIARHAFHNLEFLRYLDLSYNRLVNISHGAFT 707

  Fly   379 PLYNLHTLNLAENRLHTLDNRIFNGLYV---LTKLTLN---NNLVS------------------- 418
            .|.||..|:|..|:|.:|..:.|  |||   .|.|.||   |::.|                   
  Fly   708 VLPNLAALDLMHNQLCSLSLKSF--LYVSNTTTPLRLNVSHNHIASFYDELSSYMYIYQLDISHN 770

  Fly   419 -IVESQAFRNCSD-LKELDLSSNQLTEV-PEAVQDLSMLKTLDLGENQISEFKNNTFRNLNQLTG 480
             :.:|.:|.|.:: |:.|:|:.|||..: ..|..||..|:.|::..|.::..:..:|:.||.|..
  Fly   771 HVTKSDSFTNLANTLRFLNLAHNQLGSLQSHAFGDLEFLEILNVAHNNLTSLRRRSFQGLNSLQE 835

  Fly   481 LRLIDNRIGNITVGMFQDLPRLSVLNLAKNRIQSIERGAFDKNTEIEAIRLDKNFL--------T 537
            |.|..|::..:.|..|.:|.:|.:|.:..||::::.|..| .||.:|.:.:.:|.|        |
  Fly   836 LDLSHNQLDQLQVEQFSNLRKLRILRINSNRLRALPREVF-MNTRLEFLDIAENQLSVWPVPAFT 899

  Fly   538 DINGIFATLASLLWLNLSENHLVWFDYA-FIPSNLKWLDIHGNYIEALGNYYKLQEEIRVTTLDA 601
            ||.   .||.|   :.:|.|:|.:.|.: ||.|...:                        .:..
  Fly   900 DIG---FTLRS---IQMSHNNLEYLDASMFINSQFLY------------------------DISL 934

  Fly   602 SHNRITEIGAMSVPNSIELLFINNNIIGQIQANTFVDKTRLARVDLYANVLSKISLN--ALRVAP 664
            :.||||     .:|:: ...|:||.....:..|..| .|.|..|.::...|.|:||:  .|.|.|
  Fly   935 ARNRIT-----ILPDN-TFSFLNNLTNLDLSQNPLV-TTNLREVFVHTPRLRKLSLHHMGLYVLP 992

  Fly   665 VSAEKPVPEFYLGGNPFECDCSMEWLQRINNLTTRQHPHVVD-----LGNIECLMPH-------- 716
             ..:.|:..:        .|.|..:||.::.|.:.:|...|:     |.|..|...|        
  Fly   993 -PLKLPLLSY--------LDVSGNYLQELSPLGSLRHLRHVNVSHNKLTNASCAAEHLPPSVRVL 1048

  Fly   717 ------SRSAPLRPLASLSASDFVCKYESHCPPTCHCCEYEQCECEVICPGNCSCFHDATWATNI 775
                  .|...|..||||.                |..|....:.:|..|   ..|........:
  Fly  1049 DLAHNPLRRITLHDLASLR----------------HLAELNILDVKVTNP---QAFSKLRSLRKL 1094

  Fly   776 VDCGRQDLAALPNRIP--QDVSDLYLDGNNMPELEVGHLTGRRNLRALYLNASNLMTLQNG---- 834
            ......:|..:..|||  |.:....|:.|...:| ...|.....:|.|.|..||:.|:...    
  Fly  1095 HASSHANLGEIVARIPGLQQLRVHCLEPNIGQQL-FAKLANNTKIRLLELYGSNVQTIAPDVFTG 1158

  Fly   835 -SLAQLVNLRVLHLENNKLTALEGTEFRSLGLLRELYLHNNMLTHISNATFEPLVSLEVLRLDNN 898
             |.:|.:.:::.|   .:::.|....|.:   |||:                |.:|:::   .:|
  Fly  1159 LSRSQRLQVKISH---TRISDLPPGIFYA---LREV----------------PHLSIDI---SHN 1198

  Fly   899 RLSSL------PHLQY------RHSLQGLTLGRNAWSCRC----------QQLRELAQF----VS 937
            |:::|      |:..|      |..:.||....|...|.|          :.|||.||.    ..
  Fly  1199 RINALAADSFYPNKSYWDAVGTRSIMGGLITSHNPLECECGLVWFGHWLRRWLRESAQIKVIQKD 1263

  Fly   938 DNAMVVRDAHDIYCLDAGIKRELELIGNLANGPDCSDLLDASASNISSSQDLAGGYRLPLLAAVL 1002
            |...:|:.|....|.|....|.|.:   |...|:  ||| ..||.:|||     |.|:.||:..:
  Fly  1264 DLKRMVQRARANTCHDPTSGRHLPI---LEIFPE--DLL-CQASALSSS-----GQRIFLLSFAM 1317

  Fly  1003 VLIFLVVV 1010
            .|:..:|:
  Fly  1318 ALLIPIVM 1325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
18wNP_476814.1 leucine-rich repeat 66..91 CDD:275380 11/39 (28%)
leucine-rich repeat 92..115 CDD:275380 9/23 (39%)
LRR_8 115..181 CDD:290566 27/109 (25%)
leucine-rich repeat 116..146 CDD:275380 12/68 (18%)
leucine-rich repeat 147..170 CDD:275380 11/27 (41%)
leucine-rich repeat 171..201 CDD:275380 5/29 (17%)
LRR_RI 210..464 CDD:238064 91/291 (31%)
leucine-rich repeat 212..236 CDD:275380 4/23 (17%)
LRR_8 235..295 CDD:290566 21/65 (32%)
leucine-rich repeat 237..260 CDD:275380 8/28 (29%)
leucine-rich repeat 261..284 CDD:275380 7/22 (32%)
LRR_8 283..345 CDD:290566 24/65 (37%)
leucine-rich repeat 285..308 CDD:275380 9/26 (35%)
leucine-rich repeat 309..334 CDD:275380 9/24 (38%)
LRR_8 334..393 CDD:290566 24/58 (41%)
leucine-rich repeat 335..358 CDD:275380 9/22 (41%)
leucine-rich repeat 359..382 CDD:275380 9/22 (41%)
LRR_8 382..441 CDD:290566 24/85 (28%)
leucine-rich repeat 383..406 CDD:275380 8/22 (36%)
leucine-rich repeat 407..430 CDD:275380 9/45 (20%)
LRR_8 431..488 CDD:290566 19/57 (33%)
leucine-rich repeat 431..451 CDD:275380 7/20 (35%)
leucine-rich repeat 454..477 CDD:275380 5/22 (23%)
LRR_8 477..559 CDD:290566 26/89 (29%)
leucine-rich repeat 478..499 CDD:275380 6/20 (30%)
leucine-rich repeat 502..525 CDD:275380 7/22 (32%)
leucine-rich repeat 526..548 CDD:275380 8/29 (28%)
leucine-rich repeat 590..617 CDD:275380 5/26 (19%)
leucine-rich repeat 618..641 CDD:275380 5/22 (23%)
leucine-rich repeat 642..689 CDD:275380 12/48 (25%)
LRRCT 679..736 CDD:214507 17/75 (23%)
leucine-rich repeat 775..796 CDD:275380 5/22 (23%)
LRR_8 797..852 CDD:290566 13/59 (22%)
leucine-rich repeat 797..817 CDD:275380 4/19 (21%)
leucine-rich repeat 818..841 CDD:275380 8/27 (30%)
LRR_8 841..900 CDD:290566 9/58 (16%)
leucine-rich repeat 842..865 CDD:275380 3/22 (14%)
LRR_4 866..907 CDD:289563 9/46 (20%)
leucine-rich repeat 866..889 CDD:275380 4/22 (18%)
leucine-rich repeat 890..911 CDD:275380 6/32 (19%)
TIR 1045..1183 CDD:214587
CG4168NP_001285953.1 leucine-rich repeat 99..118 CDD:275380
LRR_8 121..181 CDD:290566
LRR_RI 122..350 CDD:238064 5/8 (63%)
leucine-rich repeat 122..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..194 CDD:275380
leucine-rich repeat 195..214 CDD:275380
leucine-rich repeat 215..236 CDD:275380
LRR_8 265..322 CDD:290566
leucine-rich repeat 266..287 CDD:275380
leucine-rich repeat 288..311 CDD:275380
leucine-rich repeat 312..338 CDD:275380
LRR_RI 315..546 CDD:238064 54/223 (24%)
leucine-rich repeat 339..365 CDD:275380 6/23 (26%)
LRR_8 365..424 CDD:290566 18/58 (31%)
leucine-rich repeat 366..388 CDD:275380 5/21 (24%)
leucine-rich repeat 389..412 CDD:275380 9/22 (41%)
LRR_8 413..470 CDD:290566 8/56 (14%)
leucine-rich repeat 414..436 CDD:275380 5/21 (24%)
leucine-rich repeat 437..459 CDD:275380 0/21 (0%)
leucine-rich repeat 460..483 CDD:275380 7/22 (32%)
LRR_8 482..545 CDD:290566 22/81 (27%)
leucine-rich repeat 484..510 CDD:275380 11/27 (41%)
leucine-rich repeat 511..534 CDD:275380 7/39 (18%)
leucine-rich repeat 535..589 CDD:275380 13/53 (25%)
LRR_RI 588..891 CDD:238064 98/309 (32%)
LRR_8 588..650 CDD:290566 23/63 (37%)
leucine-rich repeat 590..613 CDD:275380 7/22 (32%)
leucine-rich repeat 614..639 CDD:275380 9/26 (35%)
LRR_8 638..698 CDD:290566 23/61 (38%)
leucine-rich repeat 640..663 CDD:275380 9/24 (38%)
leucine-rich repeat 664..687 CDD:275380 9/22 (41%)
LRR_8 688..749 CDD:290566 25/62 (40%)
leucine-rich repeat 688..711 CDD:275380 9/22 (41%)
leucine-rich repeat 712..735 CDD:275380 10/24 (42%)
leucine-rich repeat 740..783 CDD:275380 8/42 (19%)
LRR_8 784..843 CDD:290566 19/58 (33%)
leucine-rich repeat 785..808 CDD:275380 9/22 (41%)
leucine-rich repeat 809..832 CDD:275380 5/22 (23%)
LRR_RI <827..1053 CDD:238064 66/272 (24%)
LRR_8 832..890 CDD:290566 17/58 (29%)
leucine-rich repeat 833..856 CDD:275380 7/22 (32%)
leucine-rich repeat 857..879 CDD:275380 7/22 (32%)
leucine-rich repeat 880..900 CDD:275380 3/19 (16%)
LRR_8 904..963 CDD:290566 19/91 (21%)
leucine-rich repeat 905..928 CDD:275380 9/25 (36%)
leucine-rich repeat 929..952 CDD:275380 6/52 (12%)
leucine-rich repeat 953..977 CDD:275380 5/24 (21%)
leucine-rich repeat 978..1020 CDD:275380 13/50 (26%)
LRR_8 1019..1074 CDD:290566 14/70 (20%)
leucine-rich repeat 1045..1068 CDD:275380 6/38 (16%)
leucine-rich repeat 1069..1090 CDD:275380 4/23 (17%)
leucine-rich repeat 1091..1114 CDD:275380 4/22 (18%)
leucine-rich repeat 1115..1161 CDD:275380 10/46 (22%)
leucine-rich repeat 1162..1190 CDD:275380 7/49 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453626
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45617
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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