DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment 18w and CG42346

DIOPT Version :10

Sequence 1:NP_476814.1 Gene:18w / 37277 FlyBaseID:FBgn0287775 Length:1385 Species:Drosophila melanogaster
Sequence 2:NP_001036303.2 Gene:CG42346 / 3355160 FlyBaseID:FBgn0259677 Length:1817 Species:Drosophila melanogaster


Alignment Length:990 Identity:254/990 - (25%)
Similarity:400/990 - (40%) Gaps:238/990 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 LDLQCSQELLHASELAPGLFRQLQKLSELRIDACKLQRVPPNAFEGLMSLKRLTLESHNAVWG-- 129
            |||..:|    .:|:.|..||...:|..|...|.:::.|.|.||:.|..|..|.: |||.:.|  
  Fly   465 LDLSSNQ----FAEIGPDCFRAFPQLKTLSFYANQIELVQPEAFKSLRELMSLDM-SHNRIIGLD 524

  Fly   130 -----PGKTLE--------LH--GQSFQGLKELSELHLGDNNIRQLPEGVWCSMPSLQLLNLTQN 179
                 ..|.|:        :|  |..|..|.:|.|:.|.:|||.:||...:.:..::.::.|..|
  Fly   525 PKVFEKNKRLQTVDLSHNHIHTIGGVFSNLPQLREVFLSENNILELPADAFTNSTNVDVIYLESN 589

  Fly   180 RIRSAEFLGFS-----------------------EKLCAGSALSNANGAVSGGSELQTLDVS-FN 220
            .|...:...||                       :|....::||..|      :|:|.|::. |.
  Fly   590 AIAHIDPNVFSTLVNLDHLYLRSNFIPLLPVTLFDKSTKLTSLSLDN------NEIQDLEIGMFR 648

  Fly   221 ELRSLPDA-WGASRLRR-----------LQTLSLQHNNISTLAPNALAGLSSLRVLNISYNHLVS 273
            :|..|.:. ...:|:||           ||.|.:|.|:|..:.|.|...|.:::.:|:..|.|..
  Fly   649 KLEHLREVRLHNNRIRRVRRGVFEPLPSLQELHIQKNSIEDIEPQAFHTLENMQHINLQDNQLTV 713

  Fly   274 L----PSEAFAGNKELRELHLQGNDLYELPKGLLHRLEQLLVLDLSGNQLTSHHVDNSTFAGLIR 334
            |    |.|    |..|..:.|:.|.|:::......|.:::.::.|..||||  .|:.|.||...:
  Fly   714 LEDIFPDE----NSSLLSVQLEANYLHKVHPRTFSRQQKVQIMWLKDNQLT--RVERSFFADTPQ 772

  Fly   335 LIVLNLSNNALTRIGSKTFKELYFLQILDMRNNSI---------------------GHIE--EG- 375
            |..|.||:|.:..|...||..|..||.||:..|.:                     .|||  || 
  Fly   773 LGRLYLSDNKIRDIEKDTFVNLLLLQFLDLSGNQLRQLRRDYFAPLQDLEELSLARNHIEAIEGY 837

  Fly   376 AFLPLYNLHTLNLAENRLHTLDNRIFNGLYVLTKLTLNNNLVSIVESQAFRNCSDLKELDLSSNQ 440
            ||..|.||.:|:|:.|.|..|...||:..:.|..|.|.|..:..:|..||::.::|.||:|..||
  Fly   838 AFAKLKNLKSLDLSHNPLVQLTRDIFSNEFPLNSLNLGNCSLRKLEQHAFKSLTNLNELNLERNQ 902

  Fly   441 LTEVPEAVQDLSMLKTLDLGENQISEFKN--------NTFRNLNQLTGLRLIDNRIGNITVGMFQ 497
            |........|:..|:.|.|..|..|...:        :..|:|.||:        :.|.::|...
  Fly   903 LNPADIQTLDIPNLRRLLLSHNNFSYAGSVGIMAGMLDRLRSLQQLS--------MSNCSLGQIP 959

  Fly   498 DL-----PRLSVLNLAKNRIQSIERGAFDKNTEIEAIRLDKNFLTDINGI-FATLASLLWLNLSE 556
            ||     ..|..|:|..||:..|.|..|......:.:||.:|.|:|...| ...|::|..|:|:.
  Fly   960 DLLFAKNTNLVRLDLCDNRLTQINRNIFSGLNVFKELRLCRNELSDFPHIALYNLSTLESLDLAR 1024

  Fly   557 NHLVWFDYAFIPS--NLKWLDIHGNYIEALGNYYKLQEEIRVTTLDA---SHNRITEIGAMSVPN 616
            |.|...|:..:..  ||:.|.:..|.|.||..:    ..:.:|.||:   |.|.:..:.|..:.:
  Fly  1025 NQLASIDFFKLSGTLNLRQLILRDNKITALSGF----NAVNLTQLDSVDLSGNLLLSLPANFLRH 1085

  Fly   617 SIEL--LFINNNIIGQIQANTFVDKT--RLARVDLYANVLSKISLNALRVAPVSAEK-P-VPEFY 675
            ||.|  :.::||...||.::...|.:  ||:.::|..|.::       |:..|..|: | :.|.|
  Fly  1086 SINLQKVHLSNNRFLQIPSSALSDVSIPRLSWLNLTGNPIN-------RIYTVKEERYPYLKELY 1143

  Fly   676 --------LGGNPFECDCSMEWLQRINNLTTRQHPHVVDLGNIECLMPHSRSAPLRPLASLSASD 732
                    |....||...:::.|..:||..||                                 
  Fly  1144 ICQTNLSILTSKDFEAFQALQHLHLVNNRITR--------------------------------- 1175

  Fly   733 FVCKYESHCPPTCHCCEYEQCECEVICPGNCSCFHDATWATNIVDCGRQDLAALPNRIPQDVSDL 797
                                     |.||                    ...:|.|.:..|:|  
  Fly  1176 -------------------------ISPG--------------------AFKSLTNLLTLDLS-- 1193

  Fly   798 YLDGNNMPELEVGHLTGRRNLRALYLNASNLMTLQNGSLAQLVNLRVLHLENNKLTALEGTEFRS 862
               .|.:..|....|.|.|.||.|.::.:.|..|:..|: .|:.::.|.|..|:|..:....||:
  Fly  1194 ---VNELEMLPKERLQGLRLLRFLNISHNTLKDLEEFSV-DLLEMQTLDLSFNQLDRISKKTFRN 1254

  Fly   863 LGLLRELYLHNNMLTHISNATFEPLVSLEVLRLDNNRLSSLPHLQYR---HSLQGLTLGRNAWSC 924
            |..|.||:|..|.:|.:||..|..|..|.||.|..|....:|....|   .:|:.|.|..|...|
  Fly  1255 LHGLLELFLMGNRMTVLSNDAFRFLRKLHVLDLRKNYFELVPLEPLRPLETNLRTLRLEENPLHC 1319

  Fly   925 RCQQLRELAQFVSDN 939
            .| ..::|.:::.|:
  Fly  1320 SC-DAQKLWEWLRDH 1333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
18wNP_476814.1 leucine-rich repeat 66..91 CDD:275380 8/23 (35%)
leucine-rich repeat 92..115 CDD:275380 8/22 (36%)
LRR_8 115..181 CDD:404697 22/82 (27%)
leucine-rich repeat 116..146 CDD:275380 12/46 (26%)
leucine-rich repeat 147..170 CDD:275380 8/22 (36%)
leucine-rich repeat 171..201 CDD:275380 7/52 (13%)
LRR 210..592 CDD:443914 126/438 (29%)
leucine-rich repeat 212..236 CDD:275380 6/25 (24%)
leucine-rich repeat 237..260 CDD:275380 9/22 (41%)
leucine-rich repeat 261..284 CDD:275380 7/26 (27%)
leucine-rich repeat 285..308 CDD:275380 5/22 (23%)
leucine-rich repeat 309..334 CDD:275380 9/24 (38%)
leucine-rich repeat 335..358 CDD:275380 9/22 (41%)
leucine-rich repeat 359..382 CDD:275380 13/46 (28%)
leucine-rich repeat 383..406 CDD:275380 8/22 (36%)
leucine-rich repeat 407..430 CDD:275380 7/22 (32%)
leucine-rich repeat 431..451 CDD:275380 7/19 (37%)
leucine-rich repeat 454..477 CDD:275380 7/30 (23%)
leucine-rich repeat 478..499 CDD:275380 3/20 (15%)
leucine-rich repeat 502..525 CDD:275380 8/22 (36%)
leucine-rich repeat 526..548 CDD:275380 7/22 (32%)
leucine-rich repeat 590..617 CDD:275380 6/29 (21%)
leucine-rich repeat 618..641 CDD:275380 7/26 (27%)
leucine-rich repeat 642..689 CDD:275380 12/56 (21%)
LRRCT 679..736 CDD:214507 7/56 (13%)
LRR <775..>920 CDD:443914 43/147 (29%)
leucine-rich repeat 775..796 CDD:275380 3/20 (15%)
leucine-rich repeat 797..817 CDD:275380 4/19 (21%)
leucine-rich repeat 818..841 CDD:275380 7/22 (32%)
leucine-rich repeat 842..865 CDD:275380 7/22 (32%)
leucine-rich repeat 866..889 CDD:275380 10/22 (45%)
leucine-rich repeat 890..911 CDD:275380 7/23 (30%)
TIR 1045..1183 CDD:214587
CG42346NP_001036303.2 LRR <301..606 CDD:443914 41/145 (28%)
leucine-rich repeat 303..325 CDD:275380
leucine-rich repeat 327..350 CDD:275380
leucine-rich repeat 351..461 CDD:275380
leucine-rich repeat 399..422 CDD:275380
leucine-rich repeat 462..485 CDD:275380 8/23 (35%)
LRR 486..>736 CDD:443914 65/260 (25%)
leucine-rich repeat 486..509 CDD:275380 8/22 (36%)
leucine-rich repeat 510..533 CDD:275380 6/23 (26%)
leucine-rich repeat 534..556 CDD:275380 5/21 (24%)
leucine-rich repeat 557..580 CDD:275380 8/22 (36%)
leucine-rich repeat 581..604 CDD:275380 5/22 (23%)
leucine-rich repeat 605..628 CDD:275380 1/22 (5%)
PPP1R42 627..860 CDD:455733 71/244 (29%)
leucine-rich repeat 629..652 CDD:275380 8/28 (29%)
leucine-rich repeat 653..676 CDD:275380 4/22 (18%)
leucine-rich repeat 677..700 CDD:275380 9/22 (41%)
leucine-rich repeat 701..748 CDD:275380 12/50 (24%)
leucine-rich repeat 725..736 CDD:275378 3/10 (30%)
leucine-rich repeat 749..772 CDD:275380 9/24 (38%)
leucine-rich repeat 773..793 CDD:275380 8/19 (42%)
leucine-rich repeat 821..844 CDD:275380 8/22 (36%)
leucine-rich repeat 845..868 CDD:275380 8/22 (36%)
LRR 869..1226 CDD:443914 105/458 (23%)
leucine-rich repeat 869..892 CDD:275380 7/22 (32%)
leucine-rich repeat 893..915 CDD:275380 8/21 (38%)
leucine-rich repeat 916..944 CDD:275380 5/27 (19%)
leucine-rich repeat 945..968 CDD:275380 7/30 (23%)
leucine-rich repeat 969..992 CDD:275380 8/22 (36%)
leucine-rich repeat 993..1014 CDD:275380 6/20 (30%)
leucine-rich repeat 1017..1040 CDD:275380 6/22 (27%)
leucine-rich repeat 1041..1064 CDD:275380 6/26 (23%)
leucine-rich repeat 1089..1114 CDD:275380 6/24 (25%)
leucine-rich repeat 1115..1162 CDD:275380 12/53 (23%)
PPP1R42 1155..1317 CDD:455733 54/245 (22%)
leucine-rich repeat 1163..1186 CDD:275380 9/100 (9%)
leucine-rich repeat 1187..1210 CDD:275380 6/27 (22%)
leucine-rich repeat 1211..1233 CDD:275380 7/22 (32%)
leucine-rich repeat 1234..1257 CDD:275380 7/22 (32%)
leucine-rich repeat 1258..1279 CDD:275380 9/20 (45%)
leucine-rich repeat 1282..1306 CDD:275380 7/23 (30%)
Blue background indicates that the domain is not in the aligned region.

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