DRSC/TRiP Functional Genomics Resources

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Protein Alignment 18w and Lgr6

DIOPT Version :10

Sequence 1:NP_476814.1 Gene:18w / 37277 FlyBaseID:FBgn0287775 Length:1385 Species:Drosophila melanogaster
Sequence 2:NP_001405234.1 Gene:Lgr6 / 329252 MGIID:2441805 Length:1004 Species:Mus musculus


Alignment Length:569 Identity:159/569 - (27%)
Similarity:226/569 - (39%) Gaps:149/569 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 IIAVAACLLLLV-ADAHAQQQ-----------CNWQYGLTTMDIRCSVRALESGTGTPLDLQVAE 62
            ::|:..|.:|.. |.|.:..|           |:.|.....:...||...|   :..|.||....
Mouse     7 LLALWLCAVLCASARAGSDPQPGPGRPACPAPCHCQEDGIMLSADCSELGL---SVVPADLDPLT 68

  Fly    63 AAGRLDLQCSQELLHASELAPGLFRQLQKLSELRIDACKLQRVPPNAFEGLMSLKRLTLESH--- 124
            |  .|||..:    :.:||.||||..|:.|.|||:....|..:|..||.||.|||.|.|:|:   
Mouse    69 A--YLDLSMN----NLTELQPGLFHHLRFLEELRLSGNHLSHIPGQAFSGLHSLKILMLQSNQLR 127

  Fly   125 ----NAVWG-PG-KTLELHG--------QSFQGLKELSELHLGD--------------------- 154
                .|:|. |. ::|.|..        :||:||..|..|.|.|                     
Mouse   128 GIPAEALWELPSLQSLRLDANLISLVPERSFEGLSSLRHLWLDDNALTEIPVRALNNLPALQAMT 192

  Fly   155 ---NNIRQLPEGVWCSMPSLQLLNLTQNRIRSA-----------------------EFLG--FSE 191
               |:||.:|:..:.::.||.:|:|..|||:..                       .|||  ..|
Mouse   193 LALNHIRHIPDYAFQNLTSLVVLHLHNNRIQHVGTHSFEGLHNLETLVFFLFCSPERFLGEPAGE 257

  Fly   192 KLCAGSALSNANGAVSGGSELQTLDVSFNELRSLPDAWGASRLRRLQTLSLQHNNISTLAPNALA 256
            ..|.|   ..|...:.||.  ...|:::|||:..|.|  ...|.|||.|...:|||..:...|..
Mouse   258 GRCGG---GGAAARMKGGR--NDRDLNYNELQEFPLA--IRTLGRLQELGFHNNNIKAIPEKAFM 315

  Fly   257 GLSSLRVLNISYNHLVSLPSEAFAGNKELRELHLQG-NDLYE----------------------L 298
            |...|:.::...|.:..:...||....:|..|.|.| .|:.|                      |
Mouse   316 GSPLLQTIHFYDNPIQFVGRSAFQYLSKLHTLSLNGATDIQEFPDLKGTTSLEILTLTRAGIRLL 380

  Fly   299 PKGLLHRLEQLLVLDLSGNQL----TSHHVDNSTFAGLIRLIVLNLSNNALTRIGSKTFKELYFL 359
            |.|:..:|.:|.:|:||.||:    :.|...        :|..:.|.:|.:..||:.||.:|..|
Mouse   381 PPGVCQQLPRLRILELSHNQIEELPSLHRCQ--------KLEEIGLRHNRIKEIGADTFSQLGSL 437

  Fly   360 QILDMRNNSIGHIEEGAFLPLYNLHTLNLAENRLHTLDNRIFNGLYVLTKLTLNNNLVSIVESQA 424
            |.||:..|:|..|...||..|.:|..|:|.:|:|.||.   ..||..|..|.|..||..   |||
Mouse   438 QALDLSWNAIRAIHPEAFSTLRSLVKLDLTDNQLTTLP---LAGLGGLMHLKLKGNLAL---SQA 496

  Fly   425 FRNCSDLKELDLSSNQLTEVPEAVQ------DLSMLKTLDLGENQISEF 467
            |...|      ....::.|||.|.|      ..|..||  .|:.|..:|
Mouse   497 FSKDS------FPKLRILEVPYAYQCCAYGICASFFKT--SGQWQAEDF 537

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
18wNP_476814.1 leucine-rich repeat 66..91 CDD:275380 10/24 (42%)
leucine-rich repeat 92..115 CDD:275380 10/22 (45%)
LRR_8 115..181 CDD:404697 28/106 (26%)
leucine-rich repeat 116..146 CDD:275380 14/46 (30%)
leucine-rich repeat 147..170 CDD:275380 8/46 (17%)
leucine-rich repeat 171..201 CDD:275380 12/54 (22%)
LRR 210..592 CDD:443914 85/291 (29%)
leucine-rich repeat 212..236 CDD:275380 7/23 (30%)
leucine-rich repeat 237..260 CDD:275380 8/22 (36%)
leucine-rich repeat 261..284 CDD:275380 4/22 (18%)
leucine-rich repeat 285..308 CDD:275380 10/45 (22%)
leucine-rich repeat 309..334 CDD:275380 7/28 (25%)
leucine-rich repeat 335..358 CDD:275380 8/22 (36%)
leucine-rich repeat 359..382 CDD:275380 10/22 (45%)
leucine-rich repeat 383..406 CDD:275380 9/22 (41%)
leucine-rich repeat 407..430 CDD:275380 9/22 (41%)
leucine-rich repeat 431..451 CDD:275380 5/25 (20%)
leucine-rich repeat 454..477 CDD:275380 5/14 (36%)
leucine-rich repeat 478..499 CDD:275380
leucine-rich repeat 502..525 CDD:275380
leucine-rich repeat 526..548 CDD:275380
leucine-rich repeat 590..617 CDD:275380
leucine-rich repeat 618..641 CDD:275380
leucine-rich repeat 642..689 CDD:275380
LRRCT 679..736 CDD:214507
LRR <775..>920 CDD:443914
leucine-rich repeat 775..796 CDD:275380
leucine-rich repeat 797..817 CDD:275380
leucine-rich repeat 818..841 CDD:275380
leucine-rich repeat 842..865 CDD:275380
leucine-rich repeat 866..889 CDD:275380
leucine-rich repeat 890..911 CDD:275380
TIR 1045..1183 CDD:214587
Lgr6NP_001405234.1 LRR <51..350 CDD:443914 88/314 (28%)
leucine-rich repeat 70..91 CDD:275380 10/24 (42%)
leucine-rich repeat 92..115 CDD:275380 10/22 (45%)
leucine-rich repeat 116..139 CDD:275380 7/22 (32%)
leucine-rich repeat 140..163 CDD:275380 6/22 (27%)
leucine-rich repeat 164..187 CDD:275380 4/22 (18%)
leucine-rich repeat 188..211 CDD:275380 4/22 (18%)
leucine-rich repeat 212..235 CDD:275380 6/22 (27%)
leucine-rich repeat 236..295 CDD:275380 16/65 (25%)
LRR 277..>508 CDD:443914 74/252 (29%)
leucine-rich repeat 296..319 CDD:275380 8/22 (36%)
leucine-rich repeat 320..341 CDD:275380 4/20 (20%)
leucine-rich repeat 344..385 CDD:275380 9/40 (23%)
leucine-rich repeat 391..412 CDD:275380 7/28 (25%)
leucine-rich repeat 413..436 CDD:275380 8/22 (36%)
leucine-rich repeat 437..458 CDD:275380 9/20 (45%)
leucine-rich repeat 461..481 CDD:275380 9/22 (41%)
7tmA_LGR6 599..875 CDD:320484
TM helix 1 600..626 CDD:320484
TM helix 2 634..659 CDD:320484
TM helix 3 679..709 CDD:320484
TM helix 4 721..743 CDD:320484
TM helix 5 765..794 CDD:320484
TM helix 6 803..833 CDD:320484
TM helix 7 843..868 CDD:320484
Blue background indicates that the domain is not in the aligned region.

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