DRSC/TRiP Functional Genomics Resources

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Protein Alignment 18w and Tlr6

DIOPT Version :10

Sequence 1:NP_476814.1 Gene:18w / 37277 FlyBaseID:FBgn0287775 Length:1385 Species:Drosophila melanogaster
Sequence 2:NP_997487.2 Gene:Tlr6 / 305353 RGDID:1303030 Length:806 Species:Rattus norvegicus


Alignment Length:886 Identity:197/886 - (22%)
Similarity:320/886 - (36%) Gaps:281/886 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   434 LDLSSNQLTEVPEAVQDLS-MLKTLDLGENQISEFKNNTFRNLNQLTGLRLIDNRIGNITVGMFQ 497
            :|.|:..||.||   :||| ..|:|.|.:|.||:.:.:....|::                    
  Rat    47 VDYSNKNLTHVP---KDLSPSTKSLSLSQNSISDLQMSDISFLSE-------------------- 88

  Fly   498 DLPRLSVLNLAKNRIQSIERGAFDKNTEIEAIRLDKNFLTDINGIFATLASLLWLNLSENHLVWF 562
                |.||.|:.|||:.::.|.|..|.::|                       :|::|.|.|.  
  Rat    89 ----LRVLRLSHNRIRRLDFGVFLLNRDLE-----------------------YLDVSHNQLQ-- 124

  Fly   563 DYAFIPS-NLKWLDIHGNYIEAL------GNYYKLQ-------EEIRVTTLDASHNRIT------ 607
            :.:..|. |||.||:..|..|.|      ||..||.       :..::..|..||..::      
  Rat   125 NISCCPMVNLKHLDLSFNDFEVLPVYKEFGNLMKLSFLGLSAAKFRQLDLLPISHLHLSCVLLDL 189

  Fly   608 --------EIGAMSVPNS--IELLFINNNIIGQIQANTFVDKTRLARVDLYANVLSKISLNALRV 662
                    |..::.|||:  :.|:|..|::. .:|.|                    ||:|||..
  Rat   190 VNYQIKDGETESLQVPNTNVLHLVFHPNSLF-SVQVN--------------------ISVNALGC 233

  Fly   663 APVSAEKPVPEFYLGGNPFECDCSMEWLQRIN------NLTTRQHPHVVDLGNIECLMPHSRSAP 721
            ..:|..|.        |...|...:.:|..:.      |||. ||...    |.:|.:...:...
  Rat   234 LQLSNIKL--------NDKNCQSLIIFLSELTRGPTLLNLTL-QHIET----NWKCFVRLLQFLW 285

  Fly   722 LRPL-----------ASLSASDFV--------CKYESHC-------------------------- 741
            .||:           .|:|...|:        .|.| |.                          
  Rat   286 PRPVEYLNIYNLTITESISRETFIYVETVLKSLKIE-HVTNQVFLFVKDALYSVFAEMNIRMLTL 349

  Fly   742 --PPTCHCCEYEQCECEVICPGNCSCFHDATWATNI----VDCGRQDLAALPNRIPQ--DVSDLY 798
              .|..|          ::||...|.|....:..|:    :..|...|..|...|.|  .:.:|:
  Rat   350 SDTPFIH----------MVCPEFPSTFAFLNFTQNVFTDSIFQGCSTLKRLETLILQRNGLKNLF 404

  Fly   799 ---LDGNNMPELEV---------GHLTGR-----RNLRALYLNASNLMTLQNGSLAQLV--NLRV 844
               |....|..||.         .|:..|     .::|.|.| :||::   :.|:.:.:  .::|
  Rat   405 KVALMTKTMSSLETLDVSLNSLNSHVYDRTCAWAESIRVLNL-SSNVL---SDSVFRCLPPKVKV 465

  Fly   845 LHLENNKLTALEGTEFRSLGLLRELYLHNNMLTHISN-ATFEPLVSLEVLRLDNNRLS--SLPHL 906
            |.|.||::.::. .:...|..|:||.:.:|.||.:.. ..|.   ||.||.:|:|.:|  |....
  Rat   466 LDLHNNRIVSIP-KDVTHLQALQELNVASNFLTDLPGCGAFS---SLSVLVIDHNSVSHPSSDFF 526

  Fly   907 QYRHSLQGLTLGRNAWSCRCQQLRELAQFVSD----NAMVVRDAHDIYCLDAGIKRELELIGNLA 967
            |...:::.:|.|.|.:.|.|    ||.:||.:    :..||....|.|..|.             
  Rat   527 QSCQNIRSITAGNNPFRCTC----ELREFVKNIGQASREVVEGWPDSYRCDY------------- 574

  Fly   968 NGPDC---SDLLDASASNISSSQDLAGGYRLPLLAAVLVLIFLVVVLIIVFVFRESVRM-WLFAH 1028
              ||.   :.|.|...|.:|....|   ..:.:.|.:|:|..:...|.:.|.....:|| |.:..
  Rat   575 --PDSIKGTPLQDFHMSPLSCDTIL---LTVTIGATLLLLAAIGASLCLYFDLPWYLRMLWQWTQ 634

  Fly  1029 YGVRVCEPRFEDAGK--LYDAIILHSEKDYEFVCRNIAAELEHGRPPFRLCIQQRDLPPQASHLQ 1091
            ...|......|:..:  .:.|.:.:||.|..:|...:...||  :...|:|:.:|:..|..|.::
  Rat   635 TRHRARNIPLEELQRNLQFHAFVSYSEHDSAWVKNELLPNLE--KDDIRVCLHERNFVPGKSIVE 697

  Fly  1092 -LVEGARASRKIILVLTRNLLATEWNRIEF----RNAFHESLRGLAQKLVIIEETSVSAEAEDVA 1151
             ::.....|.|.|.||:.:.:.:||...|.    .|.|||....|.  |:::|....:       
  Rat   698 NIIHFIEKSYKSIFVLSPHFIQSEWCHYELYFAHHNLFHEGSDNLI--LILLEPIQQN------- 753

  Fly  1152 ELSPYLKSVPSN----RLLTCDRYFWEKLRYAIPIELSPRG 1188
                   ::||.    |.|...|.:.|     .|||...||
  Rat   754 -------NIPSRYHKLRALMAQRTYLE-----WPIEKGKRG 782

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
18wNP_476814.1 leucine-rich repeat 66..91 CDD:275380
leucine-rich repeat 92..115 CDD:275380
LRR_8 115..181 CDD:404697
leucine-rich repeat 116..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..201 CDD:275380
LRR 210..592 CDD:443914 44/172 (26%)
leucine-rich repeat 212..236 CDD:275380
leucine-rich repeat 237..260 CDD:275380
leucine-rich repeat 261..284 CDD:275380
leucine-rich repeat 285..308 CDD:275380
leucine-rich repeat 309..334 CDD:275380
leucine-rich repeat 335..358 CDD:275380
leucine-rich repeat 359..382 CDD:275380
leucine-rich repeat 383..406 CDD:275380
leucine-rich repeat 407..430 CDD:275380
leucine-rich repeat 431..451 CDD:275380 6/16 (38%)
leucine-rich repeat 454..477 CDD:275380 7/22 (32%)
leucine-rich repeat 478..499 CDD:275380 0/20 (0%)
leucine-rich repeat 502..525 CDD:275380 10/22 (45%)
leucine-rich repeat 526..548 CDD:275380 1/21 (5%)
leucine-rich repeat 590..617 CDD:275380 7/47 (15%)
leucine-rich repeat 618..641 CDD:275380 5/22 (23%)
leucine-rich repeat 642..689 CDD:275380 9/46 (20%)
LRRCT 679..736 CDD:214507 15/81 (19%)
LRR <775..>920 CDD:443914 42/172 (24%)
leucine-rich repeat 775..796 CDD:275380 5/26 (19%)
leucine-rich repeat 797..817 CDD:275380 7/36 (19%)
leucine-rich repeat 818..841 CDD:275380 6/24 (25%)
leucine-rich repeat 842..865 CDD:275380 6/22 (27%)
leucine-rich repeat 866..889 CDD:275380 7/23 (30%)
leucine-rich repeat 890..911 CDD:275380 8/22 (36%)
TIR 1045..1183 CDD:214587 34/146 (23%)
Tlr6NP_997487.2 None
Blue background indicates that the domain is not in the aligned region.

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