DRSC/TRiP Functional Genomics Resources

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Protein Alignment 18w and lron-11

DIOPT Version :10

Sequence 1:NP_476814.1 Gene:18w / 37277 FlyBaseID:FBgn0287775 Length:1385 Species:Drosophila melanogaster
Sequence 2:NP_491035.1 Gene:lron-11 / 171837 WormBaseID:WBGene00022129 Length:542 Species:Caenorhabditis elegans


Alignment Length:540 Identity:131/540 - (24%)
Similarity:211/540 - (39%) Gaps:179/540 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   205 AVSGGSELQT-----------LDVSFNELRSLPDAWGASRLRRLQTLSLQHNNISTLAPNALAGL 258
            ||..||.|::           ||:|.|.:..| .|...|....|:.|.|.:|:|:.|:.:..:.|
 Worm    30 AVCKGSSLRSIPILLDPRTTVLDLSNNRISRL-SADELSLYPNLEQLILHNNSITHLSADVFSTL 93

  Fly   259 SSLRVLNISYNHLVSLPSEAFAGNKELRELHLQGNDLYELPKGLLHRLEQLLVLDLSGNQLTSHH 323
            .|||||::|.|.|:|||:|.|:..|.|:.|.:..||:...|:                       
 Worm    94 PSLRVLDLSSNSLLSLPNEVFSKLKNLKTLIISSNDVQLGPE----------------------- 135

  Fly   324 VDNSTFAGLIRLIVLNLSNNALTRIGSKTFKELYFLQILDMRNNSIGHIEEGAFLPLYNLHTLNL 388
                .||||.:|..|::::|.|:.:.....|                        ||..|..|:|
 Worm   136 ----CFAGLSQLQTLSIADNRLSFLPPSVLK------------------------PLSGLRNLDL 172

  Fly   389 AENRLHTLDNRIFNGLYVLTKLTLNNNLVSIVESQAFRNCSDLKELDLSSNQLTEVPE-AVQDLS 452
            :.|:|.::...:.|.|..|..|.|..||:|.:|:..|.:..:||.||:|.|.:.::.| |:..|.
 Worm   173 SANKLLSMPASVMNNLGGLETLKLKQNLLSSLETGMFLSQKELKHLDVSENLIGDIEEGALYGLE 237

  Fly   453 MLKTLDLGENQISEFKNNTFRNLNQLTGLRLIDNRIGNITVGMFQDLPRLSVLNLAKNRIQSIER 517
            .|:||:|..||:.....||:                         .||.|..|:|:.|...|:|.
 Worm   238 KLETLNLTNNQLVRLPGNTW-------------------------SLPALKTLDLSSNLFVSLET 277

  Fly   518 GAFDKNTEIEAIRLDKNFLTDINGIFATLASLLWLNLSENHLVWFDYAFIPSNLKWLDIHGNYIE 582
            .:||                       .|.:|.:||:|.:.           |||.:.       
 Worm   278 ASFD-----------------------GLPALQYLNISHSR-----------NLKTIQ------- 301

  Fly   583 ALGNYYKLQEEIRVTTLDASHNRITEIGAMSVPNSIELLFINNNIIGQIQANTFVDKTRLARVDL 647
             :..:.:|                         :|:..|.|:::.:..|..:.|.....|:.:||
 Worm   302 -MATFVQL-------------------------SSLHWLSISSSALTHIHPSAFNPIPPLSHLDL 340

  Fly   648 YANVLSKISLNALR-VAPVSAEKP-VPEFYLGGNPFECDCSMEWLQRINNLTTRQHPHVVDLGNI 710
                    |.|.|| |||...:.| :...:|..|.:.|.|.:    |::||..|.        :.
 Worm   341 --------SNNELRYVAPGMLQWPNIRNLHLANNDWHCSCDL----RVSNLNPRD--------DA 385

  Fly   711 ECLMPHS-RSAPLRPLASLS 729
            :|..|.: ..||:..|:|.|
 Worm   386 KCSGPENLAGAPINELSSCS 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
18wNP_476814.1 leucine-rich repeat 66..91 CDD:275380
leucine-rich repeat 92..115 CDD:275380
LRR_8 115..181 CDD:404697
leucine-rich repeat 116..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..201 CDD:275380
LRR 210..592 CDD:443914 97/393 (25%)
leucine-rich repeat 212..236 CDD:275380 8/34 (24%)
leucine-rich repeat 237..260 CDD:275380 7/22 (32%)
leucine-rich repeat 261..284 CDD:275380 12/22 (55%)
leucine-rich repeat 285..308 CDD:275380 5/22 (23%)
leucine-rich repeat 309..334 CDD:275380 4/24 (17%)
leucine-rich repeat 335..358 CDD:275380 5/22 (23%)
leucine-rich repeat 359..382 CDD:275380 2/22 (9%)
leucine-rich repeat 383..406 CDD:275380 7/22 (32%)
leucine-rich repeat 407..430 CDD:275380 8/22 (36%)
leucine-rich repeat 431..451 CDD:275380 8/20 (40%)
leucine-rich repeat 454..477 CDD:275380 8/22 (36%)
leucine-rich repeat 478..499 CDD:275380 0/20 (0%)
leucine-rich repeat 502..525 CDD:275380 8/22 (36%)
leucine-rich repeat 526..548 CDD:275380 1/21 (5%)
leucine-rich repeat 590..617 CDD:275380 1/26 (4%)
leucine-rich repeat 618..641 CDD:275380 4/22 (18%)
leucine-rich repeat 642..689 CDD:275380 15/48 (31%)
LRRCT 679..736 CDD:214507 14/52 (27%)
LRR <775..>920 CDD:443914
leucine-rich repeat 775..796 CDD:275380
leucine-rich repeat 797..817 CDD:275380
leucine-rich repeat 818..841 CDD:275380
leucine-rich repeat 842..865 CDD:275380
leucine-rich repeat 866..889 CDD:275380
leucine-rich repeat 890..911 CDD:275380
TIR 1045..1183 CDD:214587
lron-11NP_491035.1 LRR 33..368 CDD:443914 116/486 (24%)
leucine-rich repeat 48..71 CDD:275380 7/23 (30%)
leucine-rich repeat 72..95 CDD:275380 7/22 (32%)
leucine-rich repeat 96..119 CDD:275380 12/22 (55%)
leucine-rich repeat 120..142 CDD:275380 9/48 (19%)
leucine-rich repeat 143..166 CDD:275380 7/46 (15%)
leucine-rich repeat 167..190 CDD:275380 7/22 (32%)
leucine-rich repeat 191..214 CDD:275380 8/22 (36%)
leucine-rich repeat 215..238 CDD:275380 9/22 (41%)
leucine-rich repeat 239..261 CDD:275380 9/46 (20%)
leucine-rich repeat 262..283 CDD:275380 8/43 (19%)
leucine-rich repeat 286..310 CDD:275380 8/67 (12%)
leucine-rich repeat 311..334 CDD:275380 4/22 (18%)
leucine-rich repeat 335..357 CDD:275380 10/29 (34%)
Blue background indicates that the domain is not in the aligned region.

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