DRSC/TRiP Functional Genomics Resources

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Protein Alignment 18w and Cd180

DIOPT Version :10

Sequence 1:NP_476814.1 Gene:18w / 37277 FlyBaseID:FBgn0287775 Length:1385 Species:Drosophila melanogaster
Sequence 2:NP_032559.2 Gene:Cd180 / 17079 MGIID:1194924 Length:661 Species:Mus musculus


Alignment Length:719 Identity:166/719 - (23%)
Similarity:271/719 - (37%) Gaps:199/719 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 TTMDIRCSVRALESGTGTPLDLQVAEAAGRLDLQCSQELLHAS-ELAPGL----FRQLQKLSELR 96
            |:.|.:|..:.:.. |....:|.:.|..|  .|..|.|.|..| .:.|.:    |.:|..|:.|.
Mouse    22 TSSDQKCIEKEVNK-TYNCENLGLNEIPG--TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLD 83

  Fly    97 IDACKLQRVPPNAFEGLMSLKRLTLESH-------NAVWGPGKTLE----------------LHG 138
            :..|::..:..:.|:....|..|.|.::       .|:.|| |.|:                ||.
Mouse    84 LTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP-KALKHLFFIQTGISSIDFIPLHN 147

  Fly   139 QSFQGLKELSELHLGDNNIR--QLPEGVWCSMPS--LQLLNLTQNRIRSAEFLGFSEKLCAGSAL 199
            |     |.|..|:||.|:|.  :||:|    .|:  |::|:...|.|........|....|.:..
Mouse   148 Q-----KTLESLYLGSNHISSIKLPKG----FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 203

  Fly   200 SNANGAVSGGSELQTLD------VSFNELRSLPDAWGASRLRRLQTL---SLQHNNISTLAPNAL 255
            .|.||....|.||...|      ::|...::|...:...:...:|:|   :.:..:...::|...
Mouse   204 LNLNGNDIAGIELGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 268

  Fly   256 AGLSSLRV--LNISYNHLVSLPSEAFAGNKELRELHLQGNDLYELPKGLLHRLEQLLVLDLSGNQ 318
            .||..:.|  :|:..::..::.|..|.....|:||.|....|.|||.||: .|..|..|.||.|:
Mouse   269 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV-GLSTLKKLVLSANK 332

  Fly   319 LTSHHVDNSTFAGLIRLIVLNLSNNALTRIGSKTFKELYFLQILDMRNNSIGHIEEGAFLPLYNL 383
            ..:                       |.:|.:..|..|..|.|  ..|.....:..|....|.||
Mouse   333 FEN-----------------------LCQISASNFPSLTHLSI--KGNTKRLELGTGCLENLENL 372

  Fly   384 HTLNLAENRLHTLD--NRIFNGLYVLTKLTLNNNLVSIVESQAFRNCSDLKELDLSSNQLTEVPE 446
            ..|:|:.:.:.|.|  |.....|..|..|.|:.|....::::||:.|..|:.|||:..:| :|.:
Mouse   373 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL-KVKD 436

  Fly   447 A---VQDLSMLKTLDLGENQISEFKNNTFRNLNQLTGLRLIDNRI--GNI-TVGMFQDLPRLSVL 505
            |   .|:|.:||.|:|..:.:.......|..|..|..|.|..|..  ||| .....|.|.||.:|
Mouse   437 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 501

  Fly   506 NLAKNRIQSIERGAFDKNTEIEAIRLDKNFLTDINGIFATLASLLWLNLSENHLVWFDYAFIPSN 570
            .|:...:.||::.||   |.::.:                           ||            
Mouse   502 VLSFCDLSSIDQHAF---TSLKMM---------------------------NH------------ 524

  Fly   571 LKWLDIHGNYIEALGNYYKLQEEIRVTTLDASHNRITEIGAMSVPNSIELLFINNNIIGQIQANT 635
                                        :|.||||:|.       :|||.|   :::.|      
Mouse   525 ----------------------------VDLSHNRLTS-------SSIEAL---SHLKG------ 545

  Fly   636 FVDKTRLARVDLYANVLS-KISLNALRVAPVSAEKPVPEFYLGGNPFECDCS----MEW----LQ 691
                       :|.|:.| :||:....:.|:.:::..  ..|..||.:|.||    :||    :|
Mouse   546 -----------IYLNLASNRISIILPSLLPILSQQRT--INLRQNPLDCTCSNIYFLEWYKENMQ 597

  Fly   692 RINN 695
            ::.:
Mouse   598 KLED 601

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
18wNP_476814.1 leucine-rich repeat 66..91 CDD:275380 8/29 (28%)
leucine-rich repeat 92..115 CDD:275380 4/22 (18%)
LRR_8 115..181 CDD:404697 25/92 (27%)
leucine-rich repeat 116..146 CDD:275380 11/52 (21%)
leucine-rich repeat 147..170 CDD:275380 9/24 (38%)
leucine-rich repeat 171..201 CDD:275380 6/29 (21%)
LRR 210..592 CDD:443914 89/400 (22%)
leucine-rich repeat 212..236 CDD:275380 4/29 (14%)
leucine-rich repeat 237..260 CDD:275380 5/25 (20%)
leucine-rich repeat 261..284 CDD:275380 4/24 (17%)
leucine-rich repeat 285..308 CDD:275380 11/22 (50%)
leucine-rich repeat 309..334 CDD:275380 5/24 (21%)
leucine-rich repeat 335..358 CDD:275380 4/22 (18%)
leucine-rich repeat 359..382 CDD:275380 5/22 (23%)
leucine-rich repeat 383..406 CDD:275380 7/24 (29%)
leucine-rich repeat 407..430 CDD:275380 7/22 (32%)
leucine-rich repeat 431..451 CDD:275380 8/22 (36%)
leucine-rich repeat 454..477 CDD:275380 6/22 (27%)
leucine-rich repeat 478..499 CDD:275380 8/23 (35%)
leucine-rich repeat 502..525 CDD:275380 7/22 (32%)
leucine-rich repeat 526..548 CDD:275380 0/21 (0%)
leucine-rich repeat 590..617 CDD:275380 6/26 (23%)
leucine-rich repeat 618..641 CDD:275380 4/22 (18%)
leucine-rich repeat 642..689 CDD:275380 12/51 (24%)
LRRCT 679..736 CDD:214507 8/25 (32%)
LRR <775..>920 CDD:443914
leucine-rich repeat 775..796 CDD:275380
leucine-rich repeat 797..817 CDD:275380
leucine-rich repeat 818..841 CDD:275380
leucine-rich repeat 842..865 CDD:275380
leucine-rich repeat 866..889 CDD:275380
leucine-rich repeat 890..911 CDD:275380
TIR 1045..1183 CDD:214587
Cd180NP_032559.2 leucine-rich repeat 38..57 CDD:275380 5/20 (25%)
LRR 1 54..75 6/20 (30%)
leucine-rich repeat 58..78 CDD:275380 5/19 (26%)
LRR 2 78..99 4/20 (20%)
leucine-rich repeat 79..102 CDD:275380 4/22 (18%)
LRR 3 102..123 4/20 (20%)
leucine-rich repeat 103..126 CDD:275380 6/23 (26%)
LRR 4 126..147 2/20 (10%)
leucine-rich repeat 127..150 CDD:275380 4/27 (15%)
LRR 5 150..171 9/24 (38%)
leucine-rich repeat 151..174 CDD:275380 10/26 (38%)
LRR 6 174..195 4/20 (20%)
leucine-rich repeat 175..201 CDD:275380 6/25 (24%)
LRR 194..559 CDD:443914 111/488 (23%)
LRR 7 201..221 6/19 (32%)
leucine-rich repeat 224..275 CDD:275380 7/50 (14%)
LRR 8 275..296 4/20 (20%)
leucine-rich repeat 276..299 CDD:275380 4/22 (18%)
LRR 9 299..321 10/22 (45%)
leucine-rich repeat 300..322 CDD:275380 11/22 (50%)
LRR 10 322..343 7/43 (16%)
leucine-rich repeat 323..346 CDD:275380 8/45 (18%)
LRR 11 346..366 5/21 (24%)
leucine-rich repeat 347..371 CDD:275380 6/25 (24%)
LRR 12 371..391 7/19 (37%)
leucine-rich repeat 372..397 CDD:275380 7/24 (29%)
LRR 13 397..418 6/20 (30%)
leucine-rich repeat 398..421 CDD:275380 7/22 (32%)
LRR 14 421..442 7/21 (33%)
leucine-rich repeat 422..446 CDD:275380 9/24 (38%)
LRR 15 446..466 4/19 (21%)
leucine-rich repeat 447..470 CDD:275380 6/22 (27%)
LRR 16 470..493 7/22 (32%)
leucine-rich repeat 471..497 CDD:275380 9/25 (36%)
LRR 17 497..518 8/23 (35%)
leucine-rich repeat 498..521 CDD:275380 8/25 (32%)
LRR 18 521..544 12/99 (12%)
leucine-rich repeat 522..545 CDD:275380 12/99 (12%)
LRR 19 546..566 6/19 (32%)
PCC 549..>623 CDD:188093 14/55 (25%)
Blue background indicates that the domain is not in the aligned region.

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