DRSC/TRiP Functional Genomics Resources

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Protein Alignment 18w and LOC100498493

DIOPT Version :9

Sequence 1:NP_476814.1 Gene:18w / 37277 FlyBaseID:FBgn0004364 Length:1385 Species:Drosophila melanogaster
Sequence 2:XP_002941870.2 Gene:LOC100498493 / 100498493 XenbaseID:XB-GENE-5824069 Length:936 Species:Xenopus tropicalis


Alignment Length:1088 Identity:240/1088 - (22%)
Similarity:395/1088 - (36%) Gaps:343/1088 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 LCAGSALSNANGAVSGGSELQTLDVSFNELRSLPDAWGASRLRRLQTLSLQHNNISTLAPNALAG 257
            ||    ||.:|..:.||:                    .:..:|::.|.:: ..:..:.|||..|
 Frog    86 LC----LSGSNTFIPGGT--------------------FANFKR
IKYLFMK-MPLVRIYPNAFKG 125

  Fly   258 LSSLRVLNISY------NHLVSLPSEAFAGNKELRELHLQGNDLYELPKGLLHRL---EQLLVLD 313
            |.||..|.||:      |:| |:|::||:....||:|.::|   ::|.|.:|..|   ..|..|.
 Frog   126 LESLESLAISFLGHSKCNNL-SIPTDAFSNLYYLRDLSIEG---FKLVKSMLIHLPFSTSLYSLS 186

  Fly   314 LSGNQLTS-HHVDNSTFAGLIRLIVLNLSNNALTRIGSKTFKELYFLQI--LDMRNNSIGHIEEG 375
            |..|.:|. .||.: .|..||.:..|::.:|.:.|:..:....:....|  |.:..|.:..|::.
 Frog   187 LPTNCITDLFHVFH-IFQNLIFIHNLDVGSNKIERVSLQHDLNISLPNITELVLEKNPLILIQQN 250

  Fly   376 AFLPLYNLHTLNL-----------------------------AENRLHTL--------------- 396
            | |..:.:|.|||                             |.|:.|||               
 Frog   251 A-LARFGIHLLNLGFTKLNLEDILNAGVENLKSLSLTSACRRAINKTHTLCSIAQRFQLKSLSAP 314

  Fly   397 DNRIFNGLYV--------LTKLTLNNNLVSIVESQAFRNCSDLKELDLSSN--QLTEVPEAVQD- 450
            .|| |:|:|.        |..|.||:|.:.||:.........||||.||.:  .:...|.:.|| 
 Frog   315 VNR-FSGIYTKDFLGCSSLEFLNLNHNHIHIVDPDLLYTLPKLKELHLSYSLLHMNLCPLSYQDN 378

  Fly   451 -LSMLKTLDLGENQISEFKNNTFRNLNQLTGLRLIDNRIGNITVGMFQDLPRLSVLNLAKNRIQS 514
             .|.::.|....|:|:..||..|..:.:||.|.|..|.|.:|....|..|..|.||:|..||:.|
 Frog   379 FTSSVEALYFIGNRITVLKNKQFFCMTKLTDLLLARNGIEHIEESAFWGLNDLRVLDLRNNRLTS 443

  Fly   515 IERGAFDKNTEIEAIRLDKNFLTDINGIFATLASLLWLNLSENHLVWFDYAFIPSNLKWLDIHGN 579
            ::                   ::.::|:                          |||..|.:..|
 Frog   444 LQ-------------------ISSLSGL--------------------------SNLMELYLQNN 463

  Fly   580 YIEALGNY-YKLQEEIRVTTLDASHNRITEIGAMSVPNSIELLFINNNIIGQIQANTFVDKTRLA 643
            .:|::..| .|.|.::          |:.:||.:||..|.| ||.|...: .||       |...
 Frog   464 VMESMQRYSLKWQTKL----------RLVKIGFVSVSVSFE-LFPNTETL-DIQ-------TTGK 509

  Fly   644 RVDLYANVLSKISLNALRVAPVSAEKPVPEFYLGGNPFECDCSMEWLQRINNLTTRQHPHVVDLG 708
            .:.::.|..:..||.:|.|              .|:..|.|                        
 Frog   510 YITVFMNETAASSLKSLSV--------------NGSHVELD------------------------ 536

  Fly   709 NIECLMPHSRSAPLRPLASLSASDFVCKYESHCPPTCHCCEYEQCECEVICPGNCSCFHDATWAT 773
             |:|  .|...:.||.|..::.:                             |..||.|      
 Frog   537 -IKC--GHQFFSTLRELKVINNN-----------------------------GLISCSH------ 563

  Fly   774 NIVDCGRQDLAALPNRIPQDVSDLYLDGNNMPELEVGHLTGRRNLRALYLNASNLMTLQNGSLAQ 838
                                    |  |..:...|        ||..:..:.|.....:|.:.:.
 Frog   564 ------------------------Y--GYQLEHFE--------NLENIQYHFSGAPLTRNVNFSN 594

  Fly   839 LVNLRVLHLENNKLTALE-----GTEFRSLGLLRELYLHNNMLTHISNATFEPLVSLEVLRLDNN 898
            :.|||.|.:| |..|||:     ...|..|..|..|.|.|....:::.|..:.:.||.||.:.|.
 Frog   595 IANLRSLEVE-NLATALDPNVPPNDLFHKLHKLEVLKLFNCGFKYMTTALLKDMRSLRVLVMKNQ 658

  Fly   899 RLSSL-PHLQYRHS-LQGLTLGRNAWSCRCQQLRELAQFVSDNAMVVRDAHDIYCLDAGIKRELE 961
            .:.:: |.||...| |:.:......:.|.|.....:...:.|....|.....::||      :|.
 Frog   659 MILAVDPGLQNTLSPLEFIYFIDVTFQCDCDNSWFVTWALEDKHTFVSGICSLFCL------QLN 717

  Fly   962 LIGNLANGPDCSDLLDASASNISSSQDLAGGYRLPLLAAVLVLIFLVVVLI----------IVFV 1016
            ...||.|           .|..|..|::  .:.|.::....:|:|:|:.::          :.:|
 Frog   718 KKFNLVN-----------FSESSCRQEI--DFMLFVITFTSLLLFIVLTMLCNIFNSDIIQLFYV 769

  Fly  1017 FRESVRMWLFAHYGVRVCEPRFEDAGKLYDAIILHSEKDYEFVCRNIAAELEH-GRPPFRLCIQQ 1080
            |    ::||....|.......:|     |||.:.:..:|..:|...:...||. ||...:||:..
 Frog   770 F----QIWLKKLRGKTNNPIAYE-----YDAFVSYCSRDQGWVVNYLVPNLEEKGRNTIKLCLHN 825

  Fly  1081 RD-LPPQASHLQLVEGARASRKIILVLTRNLLATEWNRIEFRNAFHESLRGLAQKLVIIEETSVS 1144
            || |..:.....:::....|||.|.:::.|.|.::|..:|.|.|.::.|......|:::...|:|
 Frog   826 RDFLVGKDIVDNIMDSIYKSRKTICLISYNYLQSDWCSLEMRMATYKLLAEKNDDLILVFLESIS 890

  Fly  1145 AEAEDVAELSPYLKSVPSNRLLTCDRY------------FWEKLRYAI 1180
            .     ..||.|.:..   |::....|            |||:||..:
 Frog   891 G-----YHLSAYHRLA---RIVRKKTYIDWPQEENEQAEFWERLRMTV 930

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
18wNP_476814.1 leucine-rich repeat 66..91 CDD:275380
leucine-rich repeat 92..115 CDD:275380
LRR_8 115..181 CDD:290566
leucine-rich repeat 116..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..201 CDD:275380 3/7 (43%)
LRR_RI 210..464 CDD:238064 78/321 (24%)
leucine-rich repeat 212..236 CDD:275380 0/23 (0%)
LRR_8 235..295 CDD:290566 22/65 (34%)
leucine-rich repeat 237..260 CDD:275380 6/22 (27%)
leucine-rich repeat 261..284 CDD:275380 10/28 (36%)
LRR_8 283..345 CDD:290566 20/65 (31%)
leucine-rich repeat 285..308 CDD:275380 8/25 (32%)
leucine-rich repeat 309..334 CDD:275380 9/25 (36%)
LRR_8 334..393 CDD:290566 15/89 (17%)
leucine-rich repeat 335..358 CDD:275380 3/22 (14%)
leucine-rich repeat 359..382 CDD:275380 6/24 (25%)
LRR_8 382..441 CDD:290566 27/112 (24%)
leucine-rich repeat 383..406 CDD:275380 13/66 (20%)
leucine-rich repeat 407..430 CDD:275380 7/22 (32%)
LRR_8 431..488 CDD:290566 21/60 (35%)
leucine-rich repeat 431..451 CDD:275380 9/23 (39%)
leucine-rich repeat 454..477 CDD:275380 6/22 (27%)
LRR_8 477..559 CDD:290566 17/81 (21%)
leucine-rich repeat 478..499 CDD:275380 8/20 (40%)
leucine-rich repeat 502..525 CDD:275380 7/22 (32%)
leucine-rich repeat 526..548 CDD:275380 1/21 (5%)
leucine-rich repeat 590..617 CDD:275380 6/26 (23%)
leucine-rich repeat 618..641 CDD:275380 6/22 (27%)
leucine-rich repeat 642..689 CDD:275380 8/46 (17%)
LRRCT 679..736 CDD:214507 8/56 (14%)
leucine-rich repeat 775..796 CDD:275380 0/20 (0%)
LRR_8 797..852 CDD:290566 13/54 (24%)
leucine-rich repeat 797..817 CDD:275380 3/19 (16%)
leucine-rich repeat 818..841 CDD:275380 3/22 (14%)
LRR_8 841..900 CDD:290566 21/63 (33%)
leucine-rich repeat 842..865 CDD:275380 10/27 (37%)
LRR_4 866..907 CDD:289563 11/41 (27%)
leucine-rich repeat 866..889 CDD:275380 5/22 (23%)
leucine-rich repeat 890..911 CDD:275380 7/21 (33%)
TIR 1045..1183 CDD:214587 38/150 (25%)
LOC100498493XP_002941870.2 leucine-rich repeat 60..82 CDD:275380
leucine-rich repeat 83..105 CDD:275380 7/42 (17%)
leucine-rich repeat 106..128 CDD:275380 6/22 (27%)
internalin_A 143..>394 CDD:380193 66/257 (26%)
leucine-rich repeat 182..207 CDD:275380 9/25 (36%)
leucine-rich repeat 208..233 CDD:275380 3/24 (13%)
leucine-rich repeat 234..279 CDD:275380 10/45 (22%)
leucine-rich repeat 308..331 CDD:275380 5/23 (22%)
leucine-rich repeat 332..355 CDD:275380 7/22 (32%)
leucine-rich repeat 356..382 CDD:275380 9/25 (36%)
leucine-rich repeat 383..406 CDD:275380 6/22 (27%)
LRR_8 405..463 CDD:404697 21/102 (21%)
leucine-rich repeat 407..430 CDD:275380 9/22 (41%)
leucine-rich repeat 431..454 CDD:275380 8/67 (12%)
leucine-rich repeat 455..478 CDD:275380 7/22 (32%)
TIR 788..930 CDD:214587 39/154 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 195 1.000 Inparanoid score I3710
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D147327at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9322
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.060

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