DRSC/TRiP Functional Genomics Resources

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Protein Alignment 18w and rtn4rl2

DIOPT Version :9

Sequence 1:NP_476814.1 Gene:18w / 37277 FlyBaseID:FBgn0004364 Length:1385 Species:Drosophila melanogaster
Sequence 2:XP_017951401.1 Gene:rtn4rl2 / 100498486 XenbaseID:XB-GENE-6036061 Length:396 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
18wNP_476814.1 leucine-rich repeat 66..91 CDD:275380
leucine-rich repeat 92..115 CDD:275380
LRR_8 115..181 CDD:290566
leucine-rich repeat 116..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..201 CDD:275380
LRR_RI 210..464 CDD:238064
leucine-rich repeat 212..236 CDD:275380
LRR_8 235..295 CDD:290566
leucine-rich repeat 237..260 CDD:275380
leucine-rich repeat 261..284 CDD:275380
LRR_8 283..345 CDD:290566
leucine-rich repeat 285..308 CDD:275380
leucine-rich repeat 309..334 CDD:275380
LRR_8 334..393 CDD:290566
leucine-rich repeat 335..358 CDD:275380
leucine-rich repeat 359..382 CDD:275380
LRR_8 382..441 CDD:290566
leucine-rich repeat 383..406 CDD:275380
leucine-rich repeat 407..430 CDD:275380
LRR_8 431..488 CDD:290566
leucine-rich repeat 431..451 CDD:275380
leucine-rich repeat 454..477 CDD:275380
LRR_8 477..559 CDD:290566
leucine-rich repeat 478..499 CDD:275380
leucine-rich repeat 502..525 CDD:275380
leucine-rich repeat 526..548 CDD:275380
leucine-rich repeat 590..617 CDD:275380
leucine-rich repeat 618..641 CDD:275380
leucine-rich repeat 642..689 CDD:275380
LRRCT 679..736 CDD:214507
leucine-rich repeat 775..796 CDD:275380
LRR_8 797..852 CDD:290566
leucine-rich repeat 797..817 CDD:275380
leucine-rich repeat 818..841 CDD:275380
LRR_8 841..900 CDD:290566
leucine-rich repeat 842..865 CDD:275380
LRR_4 866..907 CDD:289563
leucine-rich repeat 866..889 CDD:275380
leucine-rich repeat 890..911 CDD:275380
TIR 1045..1183 CDD:214587
rtn4rl2XP_017951401.1 PLN00113 46..>268 CDD:215061
leucine-rich repeat 69..92 CDD:275380
leucine-rich repeat 93..114 CDD:275380
leucine-rich repeat 115..139 CDD:275380
leucine-rich repeat 140..163 CDD:275380
LRR_8 163..222 CDD:338972
leucine-rich repeat 164..187 CDD:275380
leucine-rich repeat 188..211 CDD:275380
leucine-rich repeat 212..235 CDD:275380
leucine-rich repeat 236..259 CDD:275380
TPKR_C2 268..310 CDD:387596
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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