DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment 18w and tlr6

DIOPT Version :9

Sequence 1:NP_476814.1 Gene:18w / 37277 FlyBaseID:FBgn0004364 Length:1385 Species:Drosophila melanogaster
Sequence 2:XP_017950845.1 Gene:tlr6 / 100493946 XenbaseID:XB-GENE-492949 Length:842 Species:Xenopus tropicalis


Alignment Length:969 Identity:196/969 - (20%)
Similarity:348/969 - (35%) Gaps:289/969 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   309 LLVLDLSGNQLTSHHVDNSTFAGLIRLIVLNLSNNALTRIGSKTFKELYFLQILDMRNNSIGHIE 373
            ||:...|..|.....:..|..|        |.||..|..: .|....|  ..:||:..|||..:|
 Frog     7 LLIYLSSSGQCVRQEIFESHIA--------NYSNKFLFAV-PKNLSSL--TTVLDISFNSIATME 60

  Fly   374 EGAFLPLYNLHTLNLAENRLHTLDNRIFNGLYVLTKLTLNNNLVSIVESQAFRNCSDLKELDLSS 438
            ...|..:::|..||.:.|::..|::.||.....|..|..::|::..: |..|.  |.::.||:|.
 Frog    61 TSEFNYIFDLQVLNASYNKMKYLNSSIFKFNTQLQYLDFSHNVLRNI-SGTFP--SHIQHLDISF 122

  Fly   439 N--QLTEVPEAVQDLSMLKTLDLGENQI--SEFK-------NNTFRNLNQLT-----GLRLIDNR 487
            |  |...|.....::.:|:.|.||.:||  |:|:       ...|..||.|.     .|.|::.:
 Frog   123 NNFQTLSVCSGFGNMVLLEYLGLGADQILKSDFEGIVHLHLKEVFIELNSLNDYENGSLLLLNTK 187

  Fly   488 IGNITVGMFQDLPRLSVLNLAKNRIQSIERGAFDK-NTEIEAIRLDKNFLTDINGIFATLASLLW 551
            ...:..|:..:..|.:||..|.|....:|.....: |..|:    .|.::               
 Frog   188 KLTLDFGVLSNEDRYNVLFDAVNTTSVLELSHLQRWNIHID----PKKYI--------------- 233

  Fly   552 LNLSENHLVWFDYAFIPSNLKWLDI--------HGNYIEALGNY-YKLQEEIRVTTLDASHNRIT 607
            .|:.:|..| .|......|::|..|        |.: :|.|..| :.|:..|..|:.|.|:..:.
 Frog   234 FNIVQNSKV-TDLTMRHVNVEWKMIVLALQYIWHSS-VETLTFYDFSLKGLIAKTSFDYSNTSVK 296

  Fly   608 EIGAMSV--------PNSIELLFINNNI-------------IGQIQANTF--VDKTRLARV-DLY 648
            .:....|        .:|:..:|.|.||             :..:.::||  :|.:..|.. ||:
 Frog   297 AVNVQGVNVGVFQFDQSSVYRVFSNMNIENLTLNFASLLFMVCPLNSSTFQSIDFSHNALTDDLF 361

  Fly   649 ANVLSKISLNALRVAPVSAEKPVPEFYLGGNPFECDCSMEWLQRINNLTTRQHPHVVDLGNIECL 713
            .:..:.|:|..|::.....||                    :.:::.:|..              
 Frog   362 KDCFTLINLKRLKLRKNKLEK--------------------IYKLSAMTEN-------------- 392

  Fly   714 MPHSRSAPLRPLASLSASDFVCKYESHCPPTCHCCEYEQCECEVICPGNCSCFHDATWATNIVDC 778
            ||        .|..|.||..:..|:..   .||                        |:.|||:.
 Frog   393 MP--------SLEYLDASHNLLAYDEE---DCH------------------------WSQNIVEL 422

  Fly   779 GRQDLAALPNRIPQDVSDLYLDGNNMPELEVGHLTGRRNLRALYLNASNLMTLQNGSLAQLVNLR 843
                                                  ||.:.:|.||....|.       ::::
 Frog   423 --------------------------------------NLASNFLTASIFKCLP-------ISIK 442

  Fly   844 VLHLENNKLTALEGTEFRSLGLLRELYLHNNMLTHISNATFEPLVSLEVLRLDNNRL--SSLPHL 906
            :|.||:|.:|.:. :....|..|.||.|..|.|..:.:.:  .:.||.:|.::.|::  .|:..:
 Frog   443 ILILESNDITHVP-SGVTHLDDLVELNLSFNRLGDLPDCS--NISSLSLLGVEGNQILYPSIESI 504

  Fly   907 QYRHSLQGLTLGRNAWSCRCQQLRELAQFVSDNAMVVRDAHDIYCLDAGIKRELELIGNLANGPD 971
            :....::.::.|:|.:.|.|    ||.:|                    |.:|.|..|.|...|:
 Frog   505 ESCSRVKHISAGQNPFQCNC----ELRRF--------------------INQEKEAPGTLIGWPE 545

  Fly   972 C-----------SDLLDASASNISSSQDLAGGYRLPLLAAVLVLIFLVVVLIIVFV--------F 1017
            .           :.|.|...|.|:.:        :.:|..|::|..::.:.:|:.:        |
 Frog   546 AYVCKYPDHLRGTMLKDFYISEITCN--------VFILIPVIILPIIISIALIIGLCKYLDGPWF 602

  Fly  1018 RESVRMWLFAHYGVRVCEPRFEDAGKLYD--AIILHSEKDYEFVCRNIAAELEHGRPPFRLCIQQ 1080
            .:.:..:.......|..:..::...:.:|  |.|.:||.|..:|.......:|......|:|..:
 Frog   603 LKMIWQYTRTKQRTRTSKQGYQSLQRDFDFNAFISYSEHDASWVKNIFLPSIERSNDCIRICQHE 667

  Fly  1081 RDLPPQASHLQ-LVEGARASRKIILVLTRNLLATEWNRIEFRNAFHESLRGLAQKLVIIEETSVS 1144
            |:..|..|.:: ::.....|.|.|.:|:.|.:.:||...|...|.|:........|::|      
 Frog   668 RNFIPGKSIIENIINCIEKSYKSIFILSPNFVQSEWCHYELYFAHHKLYTENNDNLILI------ 726

  Fly  1145 AEAEDVAELSP-YLKSVPSN----RLLTCDR-------------YFWEKLRYAIPIELS 1185
                 :.|..| ||  :||.    :.|...|             .||..||.||.|:|:
 Frog   727 -----LLEPIPQYL--IPSKYYKLKTLMAQRTYLEWPSEKSKHGLFWANLRAAISIDLT 778

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
18wNP_476814.1 leucine-rich repeat 66..91 CDD:275380
leucine-rich repeat 92..115 CDD:275380
LRR_8 115..181 CDD:290566
leucine-rich repeat 116..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..201 CDD:275380
LRR_RI 210..464 CDD:238064 42/156 (27%)
leucine-rich repeat 212..236 CDD:275380
LRR_8 235..295 CDD:290566
leucine-rich repeat 237..260 CDD:275380
leucine-rich repeat 261..284 CDD:275380
LRR_8 283..345 CDD:290566 9/35 (26%)
leucine-rich repeat 285..308 CDD:275380
leucine-rich repeat 309..334 CDD:275380 6/24 (25%)
LRR_8 334..393 CDD:290566 17/58 (29%)
leucine-rich repeat 335..358 CDD:275380 6/22 (27%)
leucine-rich repeat 359..382 CDD:275380 7/22 (32%)
LRR_8 382..441 CDD:290566 17/60 (28%)
leucine-rich repeat 383..406 CDD:275380 7/22 (32%)
leucine-rich repeat 407..430 CDD:275380 5/22 (23%)
LRR_8 431..488 CDD:290566 20/72 (28%)
leucine-rich repeat 431..451 CDD:275380 6/21 (29%)
leucine-rich repeat 454..477 CDD:275380 10/31 (32%)
LRR_8 477..559 CDD:290566 15/87 (17%)
leucine-rich repeat 478..499 CDD:275380 4/25 (16%)
leucine-rich repeat 502..525 CDD:275380 6/23 (26%)
leucine-rich repeat 526..548 CDD:275380 2/21 (10%)
leucine-rich repeat 590..617 CDD:275380 6/34 (18%)
leucine-rich repeat 618..641 CDD:275380 7/37 (19%)
leucine-rich repeat 642..689 CDD:275380 8/47 (17%)
LRRCT 679..736 CDD:214507 7/56 (13%)
leucine-rich repeat 775..796 CDD:275380 2/20 (10%)
LRR_8 797..852 CDD:290566 10/54 (19%)
leucine-rich repeat 797..817 CDD:275380 0/19 (0%)
leucine-rich repeat 818..841 CDD:275380 5/22 (23%)
LRR_8 841..900 CDD:290566 16/58 (28%)
leucine-rich repeat 842..865 CDD:275380 6/22 (27%)
LRR_4 866..907 CDD:289563 11/42 (26%)
leucine-rich repeat 866..889 CDD:275380 6/22 (27%)
leucine-rich repeat 890..911 CDD:275380 4/22 (18%)
TIR 1045..1183 CDD:214587 39/158 (25%)
tlr6XP_017950845.1 leucine-rich repeat 46..69 CDD:275378 7/22 (32%)
LRR_8 70..125 CDD:404697 17/57 (30%)
leucine-rich repeat 70..93 CDD:275378 7/22 (32%)
leucine-rich repeat 94..114 CDD:275378 5/22 (23%)
leucine-rich repeat 115..139 CDD:275378 6/23 (26%)
LRR_RI 311..>478 CDD:423007 48/281 (17%)
leucine-rich repeat 347..369 CDD:275380 4/21 (19%)
leucine-rich repeat 370..395 CDD:275380 7/66 (11%)
leucine-rich repeat 396..418 CDD:275380 8/48 (17%)
leucine-rich repeat 419..440 CDD:275380 8/65 (12%)
leucine-rich repeat 441..463 CDD:275380 6/22 (27%)
leucine-rich repeat 464..485 CDD:275380 6/22 (27%)
leucine-rich repeat 486..509 CDD:275380 4/22 (18%)
LRRCT 518..570 CDD:214507 16/75 (21%)
TIR 632..775 CDD:214587 38/155 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D147327at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X221
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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