DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment 18w and tlr2

DIOPT Version :9

Sequence 1:NP_476814.1 Gene:18w / 37277 FlyBaseID:FBgn0004364 Length:1385 Species:Drosophila melanogaster
Sequence 2:XP_002933537.2 Gene:tlr2 / 100485771 XenbaseID:XB-GENE-481145 Length:780 Species:Xenopus tropicalis


Alignment Length:924 Identity:215/924 - (23%)
Similarity:343/924 - (37%) Gaps:277/924 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   338 LNLSNNALTRIGSKTFKELYFLQILDMRNNSIGHIEEGAFLPLYNLHTLNLAENRLHTLDNRIFN 402
            ||||:||:..:.....:....||.|.::.|:|..|.:|:|.||.||..|:|:.|.|         
 Frog    55 LNLSSNAIQIVTETDLQPYDQLQTLLLQYNAIHTINDGSFQPLGNLEELDLSYNNL--------- 110

  Fly   403 GLYVLTKLTLNNNLVSIVESQAFRNCSDLKELDLSSNQLTEVPEAVQDLSMLKTLDLGENQISEF 467
                           |.:.|..|||..:||.|:|..||.               |.||.|.:   
 Frog   111 ---------------SHLSSAWFRNLYNLKHLNLLGNQY---------------LTLGNNSL--- 142

  Fly   468 KNNTFRNLNQLTGLRLIDNRIGNITVGMFQDLPRLSVLNLAKNRIQSIERGAFDKNTEIEAIRLD 532
                |.:|:.|..|:..:.....|....|:.|.||::|                   ||:|.:| 
 Frog   143 ----FASLSSLRSLQFGNQDFSAIQKLHFESLERLNIL-------------------EIKAAQL- 183

  Fly   533 KNFLTDINGIF--ATLASLLWLNLSENHLVWFDYAFIPSNLKWLDIHGNYIEALGNYYKLQEEIR 595
                    |::  .:||::..:    ||.|             |.::...:.||     |.:.|.
 Frog   184 --------GLYEEGSLAAIKQI----NHAV-------------LTVNIQNLRAL-----LNDFIH 218

  Fly   596 VTTL----DASHNRITEIGAMSVPN--SIELLFINNNIIGQIQANTFVDKTRLARV-DLYAN--- 650
            ..||    |.......::.||.:.|  ||:.|...|.||      |....:||..: ..|.|   
 Frog   219 SVTLLEMKDMQFGDAADVKAMVILNDTSIKYLVFRNCII------TDQSASRLLEIFQTYRNITD 277

  Fly   651 -VLSKISLNALRVA-PVSAEKP------------VPEFYLGGNPFECDCSMEWLQRINNLTTRQH 701
             :|...:|.....| ||..:.|            :|:|:|..:          ||.|..|.:   
 Frog   278 FILDDSTLYGTGTASPVIGDDPFSVTTAIINKLHIPKFFLFSD----------LQGIYKLAS--- 329

  Fly   702 PHVVDLGNIEC------LMPHSRSAPLRPLASLSASDFVCKYESHCPPTCHCCEYEQCECEVICP 760
                :..||.|      |||.:.|   |..:||...|......|.               .::..
 Frog   330 ----NFKNIACIDSKVFLMPCAFS---RSFSSLQYLDLSGNLLSD---------------NLLAS 372

  Fly   761 GNCSCFHDATW-ATNIVDCGRQDLAALPNRIPQDVSDL-YLDG-----NNMPELEVGHLTGRRNL 818
            ..|:......| ....::..|..|.:| .|:.|..|.| ||..     ||..||........::|
 Frog   373 SACAFEGGGAWPILQTLNVSRNLLTSL-RRLAQITSGLKYLTNLDVSQNNFGELSTSTCQWPKSL 436

  Fly   819 RALYLNASNLMTLQNGSLAQLVN-------LRVLHLENNKLTALEGTEFRSLGLLRELYLHNNML 876
            :  |||.|:         :|:.|       |::|.:.:|.||...    ..:..|.|||:.||.|
 Frog   437 K--YLNISS---------SQMSNITCIPPTLQILDVSSNYLTVFT----IKMPNLTELYISNNRL 486

  Fly   877 THISNATFEPLVSLEVLRLDNNRLSSLPHLQYRHSL----QGLTL-GR-NAWSCRCQQLRELAQF 935
            :.:....:.|  .|.:|.:|.|:|:..    |:..|    |..|| || |.:.|.||.|    .|
 Frog   487 SKLPEGMYFP--RLFMLSIDRNKLNDF----YQSDLDLFPQLTTLDGRDNNYLCSCQFL----SF 541

  Fly   936 VSDNAMVVRDAHDIYCLDAGIKRELELIGNLANGPD--CSDLLDASASNISSSQDLAGGYRLPLL 998
            :..:.:.:....|.|..|:......:.|.: ||.|.  |...|..:.|.|             ||
 Frog   542 MHSHTIALVGWPDDYICDSPSSVRGKRIQD-ANLPPLVCHKTLIVTLSCI-------------LL 592

  Fly   999 AAVLVLIFLVVVLIIVFVFRESVRMWLFA-HYGVRVCEPRFEDAGKLYDAIILHSEKDYEFVCRN 1062
            .|::..|..:...:.|..:.:....||.| ...::.|     |....|:..:.:||:|.|:|...
 Frog   593 IALVAAIAALCHFLHVVWYAKMTWAWLKAKRKPLKNC-----DREICYNGFVSYSERDSEWVENM 652

  Fly  1063 IAAELEHGRPPFRLCIQQRDLPPQASHL-QLVEGARASRKIILVLTRNLLATEWNRIE-----FR 1121
            :..:||:..||.:||:.:||..|....: .:::....|.|.:.||:.:.:.:||.:.|     ||
 Frog   653 MVPKLENAVPPMKLCLHKRDFVPGKWIIDNIIDAMEKSYKTVFVLSEHFVRSEWCKYELEFSHFR 717

  Fly  1122 NAFHESLRGLAQKLVIIEETSVSAEAEDVAELSPYLKSVPS-----NRLLTCDRY---------- 1171
             .|.|:           .:|::....|.:..     ::||.     .:|:....|          
 Frog   718 -LFDEN-----------NDTAILILLEPIEN-----ETVPKRFCKLRKLMNTKTYLEWPTDEEQQ 765

  Fly  1172 --FWEKLRYAIPIE 1183
              ||:.|:.|:..|
 Frog   766 EVFWDNLKTALQSE 779

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
18wNP_476814.1 leucine-rich repeat 66..91 CDD:275380
leucine-rich repeat 92..115 CDD:275380
LRR_8 115..181 CDD:290566
leucine-rich repeat 116..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..201 CDD:275380
LRR_RI 210..464 CDD:238064 37/125 (30%)
leucine-rich repeat 212..236 CDD:275380
LRR_8 235..295 CDD:290566
leucine-rich repeat 237..260 CDD:275380
leucine-rich repeat 261..284 CDD:275380
LRR_8 283..345 CDD:290566 5/6 (83%)
leucine-rich repeat 285..308 CDD:275380
leucine-rich repeat 309..334 CDD:275380
LRR_8 334..393 CDD:290566 21/54 (39%)
leucine-rich repeat 335..358 CDD:275380 6/19 (32%)
leucine-rich repeat 359..382 CDD:275380 10/22 (45%)
LRR_8 382..441 CDD:290566 16/58 (28%)
leucine-rich repeat 383..406 CDD:275380 5/22 (23%)
leucine-rich repeat 407..430 CDD:275380 5/22 (23%)
LRR_8 431..488 CDD:290566 14/56 (25%)
leucine-rich repeat 431..451 CDD:275380 6/19 (32%)
leucine-rich repeat 454..477 CDD:275380 6/22 (27%)
LRR_8 477..559 CDD:290566 16/83 (19%)
leucine-rich repeat 478..499 CDD:275380 4/20 (20%)
leucine-rich repeat 502..525 CDD:275380 2/22 (9%)
leucine-rich repeat 526..548 CDD:275380 5/23 (22%)
leucine-rich repeat 590..617 CDD:275380 8/32 (25%)
leucine-rich repeat 618..641 CDD:275380 6/22 (27%)
leucine-rich repeat 642..689 CDD:275380 12/64 (19%)
LRRCT 679..736 CDD:214507 15/62 (24%)
leucine-rich repeat 775..796 CDD:275380 5/20 (25%)
LRR_8 797..852 CDD:290566 17/67 (25%)
leucine-rich repeat 797..817 CDD:275380 7/25 (28%)
leucine-rich repeat 818..841 CDD:275380 6/22 (27%)
LRR_8 841..900 CDD:290566 18/65 (28%)
leucine-rich repeat 842..865 CDD:275380 5/22 (23%)
LRR_4 866..907 CDD:289563 13/40 (33%)
leucine-rich repeat 866..889 CDD:275380 8/22 (36%)
leucine-rich repeat 890..911 CDD:275380 6/20 (30%)
TIR 1045..1183 CDD:214587 36/160 (23%)
tlr2XP_002933537.2 internalin_A 55..>247 CDD:380193 68/287 (24%)
leucine-rich repeat 55..75 CDD:275378 6/19 (32%)
LRR_8 75..133 CDD:404697 25/81 (31%)
leucine-rich repeat 76..99 CDD:275378 10/22 (45%)
leucine-rich repeat 100..123 CDD:275378 10/46 (22%)
leucine-rich repeat 124..148 CDD:275378 12/45 (27%)
leucine-rich repeat 149..162 CDD:275378 2/12 (17%)
leucine-rich repeat 322..352 CDD:275378 11/39 (28%)
PRK15370 <353..>508 CDD:185268 43/187 (23%)
leucine-rich repeat 355..382 CDD:275380 4/41 (10%)
leucine-rich repeat 386..411 CDD:275380 7/25 (28%)
leucine-rich repeat 412..435 CDD:275380 5/22 (23%)
leucine-rich repeat 436..455 CDD:275380 7/29 (24%)
leucine-rich repeat 456..475 CDD:275380 5/22 (23%)
leucine-rich repeat 476..497 CDD:275380 8/22 (36%)
leucine-rich repeat 498..521 CDD:275380 7/26 (27%)
TIR 634..779 CDD:214587 36/161 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D147327at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9322
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X221
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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