DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8654 and sv2c

DIOPT Version :9

Sequence 1:NP_001246441.1 Gene:CG8654 / 37275 FlyBaseID:FBgn0034479 Length:502 Species:Drosophila melanogaster
Sequence 2:XP_002934873.1 Gene:sv2c / 100490137 XenbaseID:XB-GENE-960877 Length:725 Species:Xenopus tropicalis


Alignment Length:642 Identity:123/642 - (19%)
Similarity:210/642 - (32%) Gaps:237/642 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 IISQIGDFR-RYQLFFFFIVLLCKFGTGWHTLGHIFLAAPTPLSCKTENVTDPCSDECSETEFDT 87
            ||.:.|..| ::.|||...:.|...|.....:|.:..:|.          ||.|..:..      
 Frog   139 IIQECGHGRFQWTLFFVLGMALMADGVEVFVVGFVLPSAE----------TDMCIPDSG------ 187

  Fly    88 SVFQSTIITEWNLTCESKQLASLSQSIVMLGILFGSILFGMFADRYGRRPAFLTCCFMQLITGLI 152
                    :.|            ..|||.||::.|:..:|..||:.||:.:.|.|   ..:.|..
 Frog   188 --------SGW------------LGSIVYLGMMVGAFFWGGLADKVGRKQSLLIC---MSVNGFF 229

  Fly   153 VCVSPYYWFYCLF---RFLVAVATAGTMTTSFVLLMEIVGPKKRE----------MVAILYQ--- 201
            ..:|.:...|.||   |.|......|.:.|:|....|::..:||.          |:..:|.   
 Frog   230 AFLSSFVQGYGLFLVCRLLSGFGIGGALPTAFSYFSEVLAREKRGEHLSWLCMFWMIGGIYASAM 294

  Fly   202 ----IP-----FNIGHASLALFAYFIREWRWFQFSITIFSIVFVIYIWLVPESPRWLFTTGKLDK 257
                ||     |::|.      ||....||.|.....:..:..|:.:..:|||||:|..|||.|:
 Frog   295 AWAIIPHYGWSFSMGS------AYQFHSWRVFVIVCALPCVSAVVALTFMPESPRFLLETGKHDE 353

  Fly   258 SIKILEKIAKCNKAPTETIRPEIEAAYGALAARQPVKKGTVVDL-------FRTPYMRIKTIF-- 313
            :..||::|...|.    ..|.|.|..:.....:.|.:...::::       ::..::||:|.|  
 Frog   354 AWMILKQIHDTNM----RARGEPEKVFTVQRIKTPKQIDELIEIESDTGTWYKRCFVRIRTEFYG 414

  Fly   314 ------------MANN-------WLVVCMVYYGTA-------------QYVSAL----GGNI--- 339
                        :.:|       ||.:...|||.:             :|.|.:    |..|   
 Frog   415 IWLTFMRCFEYPVKDNTIKLTIVWLTLSFGYYGLSVWFSDVIKHLQADEYASRVKRFNGSTIADY 479

  Fly   340 --------------------FIS------------------------------------------ 342
                                |||                                          
 Frog   480 KFNYTLENQIHKNAVFINDRFISMKFKSVVFQDSLFERCYFEDVTSINTYFRNCTLIDTHFVNTD 544

  Fly   343 ---------------------------------------NAIAAGVGIPGTCLCALMTKYLGRKK 368
                                                   |.:.....:||..:.||:...:||..
 Frog   545 LEKYKFTDSQTINCTFTIPKIGCQITFDDDYSAYWIYFVNFLGTLAVLPGNIVSALLMDKIGRLT 609

  Fly   369 TLLLSNGCSALGLILLACLSTQAEAVRVTCATIGLFGASITFPNVYLYGGELFPTVVRSSGVG-- 431
            .|..|...|.:...||...::::..|.:.|...||..::....:|...  ||:||..|::|.|  
 Frog   610 MLGGSMVLSGISCFLLWFGTSESMMVGMLCVYNGLTISAWNSLDVVTV--ELYPTDKRATGFGFL 672

  Fly   432 --LCSMVGRIGSIVAPLIVDLAAYGLWVAPLIFGIFSIL--AMLGTIFLPETRGTPL 484
              ||.....:|:::...:|.:..    ..|::.....::  .::| :.||:||...|
 Frog   673 NALCKGAAVLGNLIFGSLVGITK----AIPILLASAVLVGGGLVG-LRLPDTRNQVL 724

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8654NP_001246441.1 SP 85..487 CDD:273317 109/580 (19%)
MFS 87..477 CDD:119392 104/569 (18%)
sv2cXP_002934873.1 synapt_SV2 1..725 CDD:130366 123/642 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1933
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.030

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