DRSC/TRiP Functional Genomics Resources

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Protein Alignment Obp56d and Obp83cd

DIOPT Version :9

Sequence 1:NP_001286619.1 Gene:Obp56d / 37266 FlyBaseID:FBgn0034470 Length:131 Species:Drosophila melanogaster
Sequence 2:NP_649612.1 Gene:Obp83cd / 40746 FlyBaseID:FBgn0046878 Length:242 Species:Drosophila melanogaster


Alignment Length:139 Identity:33/139 - (23%)
Similarity:54/139 - (38%) Gaps:27/139 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LIVLSVILAISAAELQLSDEQKAVAHANGALCAQQ-EGITKDQAIAL-RNGNFDDSDPKVKCFAN 66
            ||.|.:.|:::.....|..|.:.:..     |.|. .|:|.:.|..| |...:.||..::.||..
  Fly     8 LIALCLCLSLNEGLALLEHEGETINR-----CIQNYGGLTAENAERLERFKEWSDSYEEIPCFTR 67

  Fly    67 CFLEKI--------GFLINGEVQPDVVLAKLGPLAGEDAVKAVQAKCDA--TKGADKCDTAYQLF 121
            |:|.::        ||..:|.|          .:.|....:|.:.|.:.  ..|...|..||:.|
  Fly    68 CYLSEMFDFYNNLTGFNKDGIV----------GVFGRPVYEACRKKLELPFESGESSCKHAYEGF 122

  Fly   122 ECYYKNRAH 130
            .|.....:|
  Fly   123 HCITNMESH 131

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Obp56dNP_001286619.1 PBP_GOBP 19..127 CDD:279703 28/119 (24%)
Obp83cdNP_649612.1 PhBP 30..129 CDD:214783 26/113 (23%)
PhBP 149..242 CDD:214783
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11857
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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