Sequence 1: | NP_001246428.1 | Gene: | sm / 37254 | FlyBaseID: | FBgn0003435 | Length: | 552 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_015437.1 | Gene: | MRD1 / 856228 | SGDID: | S000006316 | Length: | 887 | Species: | Saccharomyces cerevisiae |
Alignment Length: | 619 | Identity: | 114/619 - (18%) |
---|---|---|---|
Similarity: | 217/619 - (35%) | Gaps: | 188/619 - (30%) |
- Green bases have known domain annotations that are detailed below.
Fly 28 PQNKKIRTGVQQPGENDVHMHARSTPQQNQQQALMNKS-----NDDLRRKRP-----ETTRPNHI 82
Fly 83 LLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKNGVQAMVEFDNLDAATRARE--NLNGADIY 145
Fly 146 AGCCTLKIDYAKPEKLN-VYKNEPDTSWD-------------------YTLSTVKEIGNG----- 185
Fly 186 ----------RSPLLQEP--------------LYVATLSTPQQHVSH--QHHHHLRQQQQQQHQQ 224
Fly 225 QAPQQQPHPQHLHHQQQLVAPAQSHNLYQFKEPPLLGPGAAFPPFG-APEYH----TTTPENWKG 284
Fly 285 AAIHPTGLMKEPAGVVPGRNAPVAFTPQGQAQGAVMMV--------YGLDH-DTSN--------- 331
Fly 332 ------TDKLFNLVCLYGNV-ARIKFLKTKEGTAMVQMGDAVAVERCVQHLNNIPVGTGGKIQIA 389
Fly 390 FSKQNFLSEVINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKNRIQPPSKILHFFNTPPGLTEDQ 454
Fly 455 LIGIFNIKDVPATSV-RLFPLKTERSSSGLIEFSNISQAVLAIMKCNHLPIEGKGTKFPFIM--- 515
Fly 516 --KLCFSSSKSMNGAWNNAASEGMIEKENEVDTK 547 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
sm | NP_001246428.1 | RRM2_hnRNPL_like | 80..165 | CDD:241138 | 14/87 (16%) |
RRM3_hnRNPL_like | 319..390 | CDD:240870 | 14/95 (15%) | ||
RRM4_hnRNPL_like | 437..519 | CDD:240873 | 19/87 (22%) | ||
MRD1 | NP_015437.1 | RRM4_MRD1 | 663..746 | CDD:409758 | |
RRM5_MRD1 | 763..837 | CDD:241014 | |||
RRM1_RBM19_MRD1 | 2..92 | CDD:409754 | |||
RRM | 222..612 | CDD:223796 | 80/439 (18%) | ||
RRM2_MRD1 | 343..421 | CDD:409982 | 25/88 (28%) | ||
RRM3_MRD1 | 532..603 | CDD:241012 | 18/81 (22%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
0 | 0.000 |