DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sm and MRD1

DIOPT Version :9

Sequence 1:NP_001246428.1 Gene:sm / 37254 FlyBaseID:FBgn0003435 Length:552 Species:Drosophila melanogaster
Sequence 2:NP_015437.1 Gene:MRD1 / 856228 SGDID:S000006316 Length:887 Species:Saccharomyces cerevisiae


Alignment Length:619 Identity:114/619 - (18%)
Similarity:217/619 - (35%) Gaps:188/619 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 PQNKKIRTGVQQPGENDVHMHARSTPQQNQQQALMNKS-----NDDLRRKRP-----ETTRPNHI 82
            |..:|.|..:::..|.:    .:...::|:::..::::     :|::|:.:.     ||.:|:. 
Yeast   103 PMKEKRREALKRFREKE----EKLLQEENRKKKKVDENKHSNIDDEIRKNKQLQEFMETMKPSS- 162

  Fly    83 LLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKNGVQAMVEFDNLDAATRARE--NLNGADIY 145
                                        ::..::|.|:...:|.:.|   .|..|  ::.|..:.
Yeast   163 ----------------------------QVTSWEKVGIDKSIEDEKL---KREEEDSSVQGNSLL 196

  Fly   146 AGCCTLKIDYAKPEKLN-VYKNEPDTSWD-------------------YTLSTVKEIGNG----- 185
            |....||.:..|.|..| |.:||.|..:.                   .::|.:|:...|     
Yeast   197 AHALALKEENNKDEAPNLVIENESDDEYSALNRNRDEDQEDAGEEEKMISISNLKDTDIGLVNDD 261

  Fly   186 ----------RSPLLQEP--------------LYVATLSTPQQHVSH--QHHHHLRQQQQQQHQQ 224
                      |..|.|:.              :..:...|.::..|:  :.:..|..::::|.::
Yeast   262 ANSDEKENEKRRNLAQDEKVSDLDWFKQRRVRIKESEAETREKSSSYATEQNESLDTKKEEQPER 326

  Fly   225 QAPQQQPHPQHLHHQQQLVAPAQSHNLYQFKEPPLLGPGAAFPPFG-APEYH----TTTPENWKG 284
            ..||:......:....|.......:.||..||...   ...|.||| ..|.|    |.|.:: ||
Yeast   327 AVPQKTDEELAIEKINQTGRLFLRNILYTSKEEDF---RKLFSPFGELEEVHVALDTRTGQS-KG 387

  Fly   285 AAIHPTGLMKEPAGVVPGRNAPVAFTPQGQAQGAVMMV--------YGLDH-DTSN--------- 331
            .|.   .|.|:....|   ||.|....| ..||.::.:        :.||. |..|         
Yeast   388 FAY---VLFKDSKNAV---NAYVELDKQ-IFQGRLLHILPGEEKKSHRLDEFDLKNMPLKKQKEL 445

  Fly   332 ------TDKLFNLVCLYGNV-ARIKFLKTKEGTAMVQMGDAVAVERCVQHLNNIPVGTGGKIQIA 389
                  :.:.|:...||.|. |.:..:..|.|....|:.||              ..:...::.|
Yeast   446 KRKAAASRQTFSWNSLYMNQDAVLGSVAAKLGLEKSQLIDA--------------ENSSSAVKQA 496

  Fly   390 FSKQNFLSEVINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKNRIQPPSKILHFFNTPPGLTEDQ 454
            .::.:.:.:|             ::|..||.......:|. |:..|...|::...|.|.|.|.::
Yeast   497 LAEAHVIGDV-------------RKYFESKGVDLTKFSQL-KSTNQRDDKVILVKNFPFGTTREE 547

  Fly   455 LIGIFNIKDVPATSV-RLFPLKTERSSSGLIEFSNISQAVLAIMKCNHLPIEGKGTKFPFIM--- 515
            |..:|    :|...: ||  |.....:..:::|.:.:.|..|..|.::     |..|...|.   
Yeast   548 LGEMF----LPYGKLERL--LMPPAGTIAIVQFRDTTSARAAFTKLSY-----KRFKDGIIYLER 601

  Fly   516 --KLCFSSSKSMNGAWNNAASEGMIEKENEVDTK 547
              |.||:.....:...||.:::   |:||.|:.|
Yeast   602 GPKDCFTKPAEADDLINNTSAK---EEENPVEVK 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smNP_001246428.1 RRM2_hnRNPL_like 80..165 CDD:241138 14/87 (16%)
RRM3_hnRNPL_like 319..390 CDD:240870 14/95 (15%)
RRM4_hnRNPL_like 437..519 CDD:240873 19/87 (22%)
MRD1NP_015437.1 RRM4_MRD1 663..746 CDD:409758
RRM5_MRD1 763..837 CDD:241014
RRM1_RBM19_MRD1 2..92 CDD:409754
RRM 222..612 CDD:223796 80/439 (18%)
RRM2_MRD1 343..421 CDD:409982 25/88 (28%)
RRM3_MRD1 532..603 CDD:241012 18/81 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

Return to query results.
Submit another query.