Protein Alignment sm and Ptbp3

DIOPT Version :9

• Sequence 1: NP_001246428.1
• Gene: sm / 37254
• FlyBaseID: FBgn0003435
• Length: 552
• Species: Drosophila melanogaster
• Sequence 2: NP_112636.1
• Gene: Ptbp3 / 83515
• RGDID: 621671
• Length: 523
• Species: Rattus norvegicus
• Alignment Length: 454
• Identity: 122/454 - (26%)
• Similarity: 182/454 - (40%)
• Gaps: 133/454 - (29%)

  Fly    82 ILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKNG-VQAMVEFDNLDAATRARENLNGADIY 145
            :|...|.|.|||:|::|||:|....|.||:|:.|.||. .||::::.:...|..|:..|:|.:||
  Rat   152 VLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNIY 216

  Fly   146 AGCCTLKIDYAKPEKLNV-YKNEPDTSWDYT---LSTVKEIGNGRSPLLQEPLYVATLSTPQQHV 206
            ..||||:||::|...||| |.|  |.|.|:|   |.|    |:|:..|
  Rat   217 NACCTLRIDFSKLTSLNVKYNN--DKSRDFTRLDLPT----GDGQPSL----------------- 258

  Fly   207 SHQHHHHLRQQQQQQHQQQAPQQQPHPQHLHHQQQLVAPAQSHNLYQFKEPPLLGPGAAFPPFGA 271
                                                             |||:   .||   |||
  Rat   259 -------------------------------------------------EPPM---AAA---FGA 268

  Fly   272 PEYHTTTPENWKGAA-IHPTGLMKEPAGV----VPGRNAPVAFT------------PQGQAQGAV 319
            |...::.   :.||| ..|.....:.||:    |||...|:..|            ..|....:|
  Rat   269 PGIMSSP---YAGAAGFAPAIAFPQAAGLSVSAVPGALGPLTLTSSAVSGRMAIPGASGIPGNSV 330

  Fly   320 MMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCVQHLNNIPVGTGG 384
            ::|..|:.|......||.|..:||:|.|:|.:..|:..|:|||.||...:..:.||
  Rat   331 LLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQIAMNHL--------- 386

  Fly   385 KIQIAFSKQNFLSEVINPFL-------LP----DHSPSFKEYTGSKNNRFLSPAQASKNRIQPPS 438
                  |.|....:|:...|       ||    :.....|:::.|..:||..|...:...|.|||
  Rat   387 ------SGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPS 445

  Fly   439 KILHFFNTPPGLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQAVLAIMKC-NH 501
            ..||..|.||.:|.|.|..:|.   ....||:.|....:.....||:..::.:|:.|:::. ||
  Rat   446 ATLHLSNIPPSVTMDDLKNLFT---EAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNH 506

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sm	NP_001246428.1	RRM2_hnRNPL_like	80..165	CDD:241138	36/84 (43%)
		RRM3_hnRNPL_like	319..390	CDD:240870	21/70 (30%)
		RRM4_hnRNPL_like	437..519	CDD:240873	20/66 (30%)
Ptbp3	NP_112636.1	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	1..25
		hnRNP-L_PTB	28..523	CDD:273733	122/454 (27%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	406..426		3/19 (16%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1545178at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.920