DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment sm and U1A

DIOPT Version :9

Sequence 1:	NP_001246428.1	Gene:	sm / 37254	FlyBaseID:	FBgn0003435	Length:	552	Species:	Drosophila melanogaster
Sequence 2:	NP_182280.1	Gene:	U1A / 819371	AraportID:	AT2G47580	Length:	250	Species:	Arabidopsis thaliana

Alignment Length:	326	Identity:	71/326 - (21%)
Similarity:	116/326 - (35%)	Gaps:	102/326 - (31%)

- Green bases have known domain annotations that are detailed below.

  Fly    79 PNHILLFTIINPFYPITVDVLHK----ICHPHGQVLRIVIFK--KNGVQAMVEFDNLDAATRARE 137
            ||..:....:|.  .:.:|.|.|    :....|::|.|:.||  |:..||.|.|||.::|:.|..
plant    16 PNQTIYINNLNE--KVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESASTAIA 78

  Fly   138 NLNGADIYAGCCTLKIDYAKPEKLNVYKNEPDTSWDYTLSTVKEIGNGRSPLLQEPLYVATLSTP 202
            .:|....|..  .::|.|||                 |.|.|....:|.
plant    79 KMNNFPFYDK--EMRIQYAK-----------------TKSDVVAKADGT---------------- 108

  Fly   203 QQHVSHQHHHHLRQQQQQQHQQQAPQQQPHPQHLHHQQQLVAPAQSHNLYQFKEPPLLGPGAAFP 267
                      .:.::::::|:::...::...|| |...|:..|..|      ..|.:.|   |.|
plant   109 ----------FVPREKRKRHEEKGGGKKKKDQH-HDSTQMGMPMNS------AYPGVYG---AAP 153

  Fly   268 PFGAPEYHTTTPENWKGAAIHPTGLMKEPAGVVPGRNAPVAFTPQGQAQGAVMMVYGLDHDTSNT 332
            |.....|                     |.|:.|  |.|.|..|...    ::.|..|.|:|:..
plant   154 PLSQVPY---------------------PGGMKP--NMPEAPAPPNN----ILFVQNLPHETTPM 191

  Fly   333 DKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCVQHLNNIPVGTGGKIQ-----IAFSK 392
             .|..|.|.|.....::.::.|.|.|.|:..|.:.....:|.|.      |.|||     |.::|
plant   192 -VLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQ------GFKIQQNQMLITYAK 249

  Fly   393 Q 393
            :
plant   250 K 250

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
sm	NP_001246428.1	RRM2_hnRNPL_like	80..165	CDD:241138	25/90 (28%)
		RRM3_hnRNPL_like	319..390	CDD:240870	20/75 (27%)
		RRM4_hnRNPL_like	437..519	CDD:240873
U1A	NP_182280.1	RRM1_U1A_like	19..96	CDD:409692	22/80 (28%)
U1A	NP_182280.1	RRM2_U1A_like	175..246	CDD:409693	19/81 (23%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR10501
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	2.010