DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sm and Hnrnpl

DIOPT Version :9

Sequence 1:NP_001246428.1 Gene:sm / 37254 FlyBaseID:FBgn0003435 Length:552 Species:Drosophila melanogaster
Sequence 2:XP_006228753.3 Gene:Hnrnpl / 80846 RGDID:71059 Length:671 Species:Rattus norvegicus


Alignment Length:534 Identity:197/534 - (36%)
Similarity:276/534 - (51%) Gaps:111/534 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 VQQPGENDVHM--HARSTPQQNQQQALMNKSNDDLRRKRPETTRPNHILLFTIINPFYPITVDVL 99
            |....:|.:::  |.........|:......:||.|       ..|.:|||||:||.|.||.|||
  Rat   199 VNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR-------SVNSVLLFTILNPIYSITTDVL 256

  Fly   100 HKICHPHGQVLRIVIFKKNGVQAMVEFDNLDAATRARENLNGADIYAGCCTLKIDYAKPEKLNVY 164
            :.||:|.|.|.|||||:|||||||||||::.:|.||:.:|||||||:|||||||:||||.:|||:
  Rat   257 YTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVF 321

  Fly   165 KNEPDTSWDYTLSTVKEIGN-GRSPLLQEPLYVATLSTPQQHVSHQHHHHLRQQQQQQHQQQAPQ 228
            ||:.|| ||||...:...|: |.:|                               .:.|:|.|.
  Rat   322 KNDQDT-WDYTNPNLSGQGDPGSNP-------------------------------NKRQRQPPL 354

  Fly   229 QQPHPQHLHH--------QQQLVAPAQSHNLYQFKEP----PLLGPGAAFPPFGAPE--YHT--- 276
            ...||.....        .:...|||:       :.|    |:|....:.|| |.|.  ||:   
  Rat   355 LGDHPAEYGEGRGFPSVDSRGSCAPAR-------RPPRKFSPVLPLFPSHPP-GGPHGGYHSHYH 411

  Fly   277 -----TTPENWKGAAIHPTGLMKEPAGVVPGRNAPVAFTPQ--------------GQAQGAVMMV 322
                 ..|.:::|..:.|      |.|  ..|..|..:.||              ..|...|:||
  Rat   412 DEGYGPPPPHYEGRRMGP------PVG--GHRRGPSRYGPQYGHPPPPPPPPDYGPHADSPVLMV 468

  Fly   323 YGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCVQHLNNIPVGTGGKIQ 387
            ||||....|.|::||:.||||||.::||:|:|.|.|||:|.|..||:|.:.|||| ....|.|:.
  Rat   469 YGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNN-NFMFGQKMN 532

  Fly   388 IAFSKQNFLSEVINPFLLP-------DHSPSFKEYTGSKNNRFLSPAQASKNRIQPPSKILHFFN 445
            :..|||        |.::|       |.|.|:|:::.|:||||.:|.||:|||||.||.:|||||
  Rat   533 VCVSKQ--------PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFN 589

  Fly   446 TPPGLTEDQLIGIFNIKDVP-ATSVRLFPLKTERSSSGLIEFSNISQAVLAIMKCNHLPIEGKGT 509
            .|..:||:....|.:...|. .|||::|..|:|||||||:|:.:.|.|:..:...||..::....
  Rat   590 APLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNG 654

  Fly   510 KFPFIMKLCFSSSK 523
            .:|:.:|||||:::
  Rat   655 PYPYTLKLCFSTAQ 668

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smNP_001246428.1 RRM2_hnRNPL_like 80..165 CDD:241138 59/84 (70%)
RRM3_hnRNPL_like 319..390 CDD:240870 36/70 (51%)
RRM4_hnRNPL_like 437..519 CDD:240873 32/82 (39%)
HnrnplXP_006228753.3 hnRNP-L_PTB 145..669 CDD:273733 197/534 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343590
Domainoid 1 1.000 117 1.000 Domainoid score I5760
eggNOG 1 0.900 - - E1_KOG1456
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1174
Inparanoid 1 1.050 297 1.000 Inparanoid score I2637
OMA 1 1.010 - - QHG48602
OrthoDB 1 1.010 - - D1545178at2759
OrthoFinder 1 1.000 - - FOG0002729
OrthoInspector 1 1.000 - - otm46151
orthoMCL 1 0.900 - - OOG6_104479
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1821
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1413.710

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