Protein Alignment sm and rbm20

DIOPT Version :9

• Sequence 1: NP_001246428.1
• Gene: sm / 37254
• FlyBaseID: FBgn0003435
• Length: 552
• Species: Drosophila melanogaster
• Sequence 2: XP_021325295.1
• Gene: rbm20 / 497540
• ZFINID: ZDB-GENE-050208-256
• Length: 1067
• Species: Danio rerio
• Alignment Length: 342
• Identity: 65/342 - (19%)
• Similarity: 107/342 - (31%)
• Gaps: 94/342 - (27%)

  Fly   181 EIGNGRSPLLQEPLYVAT----LSTPQQHVSHQHHHHLRQQQQQQHQQQAPQQQPH--------- 232
            |:.|...| ..:|.:.:|    :..|   :..|.....:.|..|..:::....|||
Zfish   284 ELYNPEEP-TADPKFNSTCGPGIGPP---IGQQGGFQSQPQVAQVEEERTLSLQPHQFNDYHGTT 344

  Fly   233 PQHLHHQ---------------QQLVAPAQSHNLYQFKEPPLLGPGAAFP--------------- 267
            |.||.||               |.:.......|...:.|.|.| ....||
Zfish   345 PSHLPHQCTICEKKVYNLKDWDQHVKGKLHLQNCSLYNESPTL-TAVHFPVSSEGCLNMALSNTM 408

  Fly   268 ----------PFGAPEYHTTT-----PENWKGAAIHPTGLMKEPAGVVPGRNAPVAFTPQGQAQG 317
                      ..|:..|...|     |.:..|..:|.:|.........|||...:...|:|..
Zfish   409 AYTSAASQDNSTGSTSYLPATAMKSFPLSGAGFPVHQSGAKFVQRKACPGRVVHICNLPEGSC-- 471

  Fly   318 AVMMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCVQHLNNIPVGT 382
                       |.|  .:.||...:|.|.....:::.. .|.::|....|.:..||:....|...
Zfish   472 -----------TEN--DVINLGLPFGKVTNYILMRSTH-QAFLEMAYVEAAQAMVQYYQLQPATI 522

  Fly   383 GG-KIQIAFSKQNFLSEVINP-----FLLPDHSPSFKEYTGSKNNRFLSPAQASKNRI----QPP 437
            .| |:.|..||:....::..|     .::.|.:...:.....:.:|:|.....|::.|    .|.
Zfish   523 NGQKLLIRMSKRYKELQLKKPGKDVDSIIQDINSQRERDEMQETDRYLPERARSRSPISRSLSPR 587

  Fly   438 SKILHF-----FNTPPG 449
            |....|     .::|||
Zfish   588 SHSPSFTSCSSAHSPPG 604

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sm	NP_001246428.1	RRM2_hnRNPL_like	80..165	CDD:241138
		RRM3_hnRNPL_like	319..390	CDD:240870	15/71 (21%)
		RRM4_hnRNPL_like	437..519	CDD:240873	5/18 (28%)
rbm20	XP_021325295.1	RRM_RBM20	459..534	CDD:241129	19/90 (21%)
		NK	<529..570	CDD:327404	6/40 (15%)
		THRAP3_BCLAF1	573..>805	CDD:317794	8/32 (25%)
		MIP-T3	695..1002	CDD:313469
		ZnF_U1	1013..1047	CDD:197732

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1545178at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	1.010