Protein Alignment sm and heph

DIOPT Version :9

• Sequence 1: NP_001246428.1
• Gene: sm / 37254
• FlyBaseID: FBgn0003435
• Length: 552
• Species: Drosophila melanogaster
• Sequence 2: NP_001247399.1
• Gene: heph / 48571
• FlyBaseID: FBgn0011224
• Length: 898
• Species: Drosophila melanogaster
• Alignment Length: 526
• Identity: 126/526 - (23%)
• Similarity: 205/526 - (38%)
• Gaps: 130/526 - (24%)

  Fly    26 EGPQNKKIRT--GVQQPGE----------NDVHMHARSTPQQNQQQA-LMNKSNDDLRRKRPETT 77
            :|..|....:  .||.|..          |....:|.|:...|.... |.|.|..:.........
  Fly   449 QGHNNSTAHSDYSVQSPASGSPLPLSAAANATSNNANSSSDSNSAMGILQNTSAVNAGGNTNAAG 513

  Fly    78 RPNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIF-KKNGVQAMVEFDNLDAATRARENLNG 141
            .||.:|...:.:..||:::|:||:|...:|:||:||.| |.|..||::::.:.::|..|:..|:|
  Fly   514 GPNTVLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKNNSFQALIQYPDANSAQHAKSLLDG 578

  Fly   142 ADIYAGCCTLKIDYAKPEKLNV-YKNEPDTSWDYT-------------LSTVKEIGNGRSPLLQE 192
            .:||.|||||:||.:|...||| |.|  |.|.|:|             :.|...:.|....||
  Fly   579 QNIYNGCCTLRIDNSKLTALNVKYNN--DKSRDFTNPALPPGEPGVDIMPTAGGLMNTNDLLL-- 639

  Fly   193 PLYVATLSTPQQHVSHQHHHHLRQQQQQQHQQQAPQQQPHPQHLHHQQQLVAPAQSHNLYQFKEP 257
               :|....|...|:.
  Fly   640 ---IAARQRPSLSVNG------------------------------------------------- 652

  Fly   258 PLLGPGAAFPPF----GAP---EYHTTTPENWKGAAIHPTGLMKEPAGVVPGRNAPVAFTPQGQA 315
              ||.....|||    |.|   .|:...| |....::..:|.::..|             |..:.
  Fly   653 --LGAPGVLPPFALGLGTPLTGGYNNALP-NLAAFSLANSGALQTTA-------------PAMRG 701

  Fly   316 QGAVMMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCVQHLNNIPV 380
            ...|::|..|:.:....|.||.|..:||:|.|:|.|..|:.:|::||.:.......:.||:.:.:
  Fly   702 YSNVLLVSNLNEEMVTPDALFTLFGVYGDVQRVKILYNKKDSALIQMAEPQQAYLAMSHLDKLRL 766

  Fly   381 GTGGKIQIAFSKQNFLSEVINPFLLP-DHSPS---FKEYTGSKNNRFLSPAQASKNRIQPPSKIL 441
             .|..|::..||...:.       || :..|.   .::|:.:..:||..|...:...|.|||..|
  Fly   767 -WGKPIRVMASKHQAVQ-------LPKEGQPDAGLTRDYSQNPLHRFKKPGSKNYQNIYPPSATL 823

  Fly   442 HFFNTPPGLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQAVLAIMK-------- 498
            |..|.|...:||.:...|........:.:.||   :.....|::..::.:||||::|
  Fly   824 HLSNIPSSCSEDDIKEAFTSNSFEVKAFKFFP---KDRKMALLQLLSVEEAVLALIKMHNHQLSE 885

  Fly   499 CNHLPI 504
            .|||.:
  Fly   886 SNHLRV 891

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sm	NP_001246428.1	RRM2_hnRNPL_like	80..165	CDD:241138	35/86 (41%)
		RRM3_hnRNPL_like	319..390	CDD:240870	21/70 (30%)
		RRM4_hnRNPL_like	437..519	CDD:240873	20/76 (26%)
heph	NP_001247399.1	hnRNP-L_PTB	366..898	CDD:273733	126/526 (24%)
		RRM1_PTBP1_like	368..448	CDD:241132
		RRM2_PTBP1_like	516..611	CDD:241137	40/96 (42%)
		RRM3_PTBP1_like	705..778	CDD:240869	22/73 (30%)
		RRM4_PTBP1_like	822..897	CDD:240871	18/73 (25%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45452972
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D107699at50557
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	3	2.850