DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sm and Smptb

DIOPT Version :9

Sequence 1:NP_001246428.1 Gene:sm / 37254 FlyBaseID:FBgn0003435 Length:552 Species:Drosophila melanogaster
Sequence 2:NP_877970.1 Gene:Smptb / 302879 RGDID:727953 Length:588 Species:Rattus norvegicus


Alignment Length:441 Identity:113/441 - (25%)
Similarity:185/441 - (41%) Gaps:77/441 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 ILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKNG-VQAMVEFDNLDAATRARENLNGADIY 145
            :|...:.|.||.:|::|||:|....|.||:|:...||. .||::::.::.:|.||:..|:|.:||
  Rat   189 VLRILVENYFYRVTLEVLHQIFSRFGTVLKIITCTKNNRFQALLQYAHVMSAERAKLFLDGQNIY 253

  Fly   146 AGCCTLKIDYAKPEKLNV-YKNE-------PDTSWDYTLSTVKEIGNGRSPLLQEPLYVATLSTP 202
            ..||||:|.::....|.| |.|:       ||...|.:..:..::.|..|.|   |....:.::|
  Rat   254 DACCTLRISFSGLTNLMVKYNNDKSRDYMRPDLPSDDSQPSPVQVQNMASAL---PAPAMSSASP 315

  Fly   203 QQHVSHQHHHHLRQQQQQQHQQQAPQQQP------HPQHLHHQQQLVAPAQSHNLYQFKEPPLLG 261
            ...::..|...:        .|.|....|      |||.:    |.||.|.|             
  Rat   316 YASIALPHTFAI--------PQAAGLANPEVFKTLHPQAI----QEVAMASS------------- 355

  Fly   262 PGAAFPPFGAPEYHTTTPENWKGAAIHPTGLMKEPAGVVPGRNAPVAFTPQGQAQGAVMMVYGLD 326
                           ::..:...||:   |..:..|..|||....:..:........|::|..|:
  Rat   356 ---------------SSSSSTAAAAV---GAAEIAAAAVPGAEGSMVTSGSPGVGSPVLLVANLN 402

  Fly   327 HDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCVQHLNNIPVGTGGKIQIAFS 391
            .:......||.|...||:|.|:|.|..::..|:|||.|....|..::|||...: .|..:.|..|
  Rat   403 QEKVTPRSLFILFGAYGDVHRVKILFNRKENALVQMADGSQAELALRHLNGHKL-YGKALCILLS 466

  Fly   392 KQNFLSEVINPFLLP----DHSPSFKEYTGSKNNRFLSPAQASKNRIQPPSKILHFFNTPPGLTE 452
            |...:.       ||    :.....|:|..|..:||..|...:...|.|||..||..|.|..::|
  Rat   467 KHQSVK-------LPREGKEDQGLTKDYANSPLHRFKKPGSKNFQNIFPPSATLHLSNLPSLVSE 524

  Fly   453 DQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQAVLAIMKCN-HL 502
            ::|..:|:.......:.|.||   :.....||...:..:|:.|::..: ||
  Rat   525 EELKNLFSSNGYAVKAFRFFP---KNHKMALIRMGSTEEAIQALVDLHGHL 572

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smNP_001246428.1 RRM2_hnRNPL_like 80..165 CDD:241138 31/84 (37%)
RRM3_hnRNPL_like 319..390 CDD:240870 23/70 (33%)
RRM4_hnRNPL_like 437..519 CDD:240873 18/67 (27%)
SmptbNP_877970.1 hnRNP-L_PTB 27..588 CDD:273733 113/441 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1545178at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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