DRSC/TRiP Functional Genomics Resources

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Protein Alignment sm and rbm20

DIOPT Version :10

Sequence 1:NP_001246428.1 Gene:sm / 37254 FlyBaseID:FBgn0003435 Length:552 Species:Drosophila melanogaster
Sequence 2:XP_002942947.3 Gene:rbm20 / 100495938 XenbaseID:XB-GENE-6465465 Length:1064 Species:Xenopus tropicalis


Alignment Length:83 Identity:21/83 - (25%)
Similarity:30/83 - (36%) Gaps:35/83 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   174 QPLQLLIATDARKST--TPQASKTTLQTIFLKADYSDRSVNCPAESVNSSVIAITRMVAASRTPE 236
            ||||||.....|.||  .||..:.||..:       .:|::|    :.|.|:             
 Frog    57 QPLQLLQVEFLRLSTHEDPQLLEATLAQL-------PQSLSC----LRSLVL------------- 97

  Fly   237 SECRTCPLGKGGNHRNVV 254
                     |||..|:.:
 Frog    98 ---------KGGQRRDTL 106

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smNP_001246428.1 hnRNP-L_PTB 45..522 CDD:273733 21/83 (25%)
rbm20XP_002942947.3 RRM_RBM20 397..472 CDD:410086
PTZ00121 <562..>756 CDD:173412
ZnF_U1 996..1030 CDD:197732
Blue background indicates that the domain is not in the aligned region.

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