DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir56c and Ir40a

DIOPT Version :9

Sequence 1:NP_611431.1 Gene:Ir56c / 37251 FlyBaseID:FBgn0034457 Length:567 Species:Drosophila melanogaster
Sequence 2:NP_610140.4 Gene:Ir40a / 35449 FlyBaseID:FBgn0259683 Length:732 Species:Drosophila melanogaster


Alignment Length:718 Identity:127/718 - (17%)
Similarity:225/718 - (31%) Gaps:252/718 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 VSPHQRLDQLDEFIMRIDEAFGKSATQTVVNNNTEM-----------------------RMIYSS 65
            |...:|...||:|:.|:.    :|..::||.:.||:                       ..:.:|
  Fly    62 VCQKERNVYLDDFLQRLH----RSNYKSVVFSQTELFFQHIEENLQGANECISLILDEPNQLLNS 122

  Fly    66 ARRNHMS-----FVFTTGAEDPIMKVFSKVLLGRHFYVSMVIYVDKVGDMHPIYDLLTFAYNQ-- 123
            ....|:.     |:|..||..|   ..|:|:..|.....:|:       ..|........|||  
  Fly   123 LHDRHLGHRLSLFIFYWGARWP---PSSRVIRFREPLRVVVV-------TRPRKKAFRIYYNQAR 177

  Fly   124 -------QFFNSMVHFESMEGVNQLFGVSKFPVM--------SFENRTDFLKYMGKIWKQVQNAR 173
                   |..|      ..:|.|  .|:.:.|::        :|:.||                 
  Fly   178 PCSDSQLQLVN------WYDGDN--LGLQRIPLLPTALSVYANFKGRT----------------- 217

  Fly   174 SDVGGFGFTTPLRQDLP--------HLFQSQGHYD--------------GSTYRIIETFVRFING 216
                   |..|:....|        :.|:....::              |..:|::....:.:|.
  Fly   218 -------FRVPVFHSPPWFWVTYCNNSFEEDEEFNSLDSIEKRKVRVTGGRDHRLLMLLSKHMNF 275

  Fly   217 SFKELIMPPDSLG------GQVIN--MKDALQLIRERKMEFCAHAYALFMSD--------EELEK 265
            .||.:..|..:.|      |:..|  ....:.|::..:.:|       |:.|        :.:|.
  Fly   276 RFKYIEAPGRTQGSMRSEDGKDSNDSFTGGIGLLQSGQADF-------FLGDVGLSWERRKAIEF 333

  Fly   266 SYPLLVVQWCLMVPLYNSVSTYFYPLQPFDWNVW-------FFALGALLALVLLELMWLRMFGGW 323
            |:..|.............::.....::||..::|       .|:......::.|..:|.|.   |
  Fly   334 SFFTLADSGAFATHAPRRLNEALAIMRPFKQDIWPHLILTIIFSGPIFYGIIALPYIWRRR---W 395

  Fly   324 SG----YRGAVLNSFCYIINV----------------PIEGQLQQPCL---LRFLL--------- 356
            :.    :.|.:.....|:..:                .:..||.|.|:   ||..|         
  Fly   396 ANSDVEHLGELYIHMTYLKEITPRLLKLKPRTVLSAHQMPHQLFQKCIWFTLRLFLKQSCNELHN 460

  Fly   357 ------LATVFFHG--FFLSAYYTSNLGSILTVNLFHAQINTMNDIVSAQLPVMIID-------- 405
                  |..|::..  :.|:..|::.|.|..........|||:..:.:|    ||.|        
  Fly   461 GYRAKFLTIVYWIAATYVLADVYSAQLTSQFARPAREPPINTLQRLQAA----MIHDGYRLYVEK 521

  Fly   406 --YEMEFLLNLNKELPQEFLELLRPVDSAVFSEHQTSFNSSFAYFVT-------------ED--- 452
              ..:|.|.| ..||.::...|:|          |...|....:|:.             ||   
  Fly   522 ESSSLEMLEN-GTELFRQLYALMR----------QQVINDPQGFFIDSVEAGIKLIAEGGEDKAV 575

  Fly   453 ----HWEFLDEQQKHLKQRLFKLSSICFGSYHLAFPLQMDSSLWRDIEYFTFRIHSSGLLNFYAR 513
                ...|.:.||  .....|:||...:..|. |..:|:.......:.....::..||:|:....
  Fly   576 LGGRETLFFNVQQ--YGSNNFQLSQKLYTRYS-AVAVQIGCPFLGSLNNVLMQLFESGILDKMTA 637

  Fly   514 SSF--------GSALHAGLVQRMPD-----TQEYTSA-----GLQHLAIAFILLLVMSFLAGIVF 560
            :.:        .:.::.|.||....     |:.|.|.     .|:.|..|||.|.|.|..||::.
  Fly   638 AEYAKQYQEVEATRIYKGSVQAKNSEAYSRTESYDSTVISPLNLRMLQGAFIALGVGSLAAGVIL 702

  Fly   561 VLE 563
            :||
  Fly   703 LLE 705

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir56cNP_611431.1 None
Ir40aNP_610140.4 PBP2_LTTR_substrate 216..338 CDD:330233 21/152 (14%)
Periplasmic_Binding_Protein_Type_2 297..>391 CDD:328725 13/100 (13%)
Periplasmic_Binding_Protein_Type_2 <496..637 CDD:328725 31/158 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR42643
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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