DRSC/TRiP Functional Genomics Resources

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Protein Alignment hpo and msn

DIOPT Version :9

Sequence 1:NP_001261092.1 Gene:hpo / 37247 FlyBaseID:FBgn0261456 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_524679.3 Gene:msn / 44030 FlyBaseID:FBgn0010909 Length:1504 Species:Drosophila melanogaster


Alignment Length:629 Identity:189/629 - (30%)
Similarity:293/629 - (46%) Gaps:116/629 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 SPNISSSCSFFKLKKLSEESLLQPPEKVFDIMYKLGEGSYGSVYKAVHKESSSIVAIKLVPVESD 78
            :|:::.|.....|      :.|:.|..:|:::..:|.|:||.|||..|.::..:.|||::.|..|
  Fly    10 APSVNCSLDDIDL------TALKDPAGIFELIEVVGNGTYGQVYKGRHTKTGQLAAIKVMDVTED 68

  Fly    79 LHEIIK-EISIMQQ-CDSPYVVRYYGSYFKQY------DLWICMEYCGAGSVSDIMRLRK-KTLT 134
            ..|.|| ||::::: .:...:..|||::.|:.      .||:.|||||||||:|:::..| ::|.
  Fly    69 EEEEIKLEINVLKKYSNHRNIATYYGAFIKKSPPGKDDQLWLVMEYCGAGSVTDLVKSTKGQSLK 133

  Fly   135 EDEIATILSDTLQGLVYLHLRRKIHRDIKAANILLNTEGYAKLADFGVAGQLTDTMAKRNTVIGT 199
            |:.||.|..:.|:||.|||..:.||||||..|:||......||.||||:.||..|:.:|||.|||
  Fly   134 EEWIAYICREILRGLSYLHSNKVIHRDIKGQNVLLTDNAEVKLVDFGVSAQLDRTIGRRNTFIGT 198

  Fly   200 PFWMAPEVI-----EEIGYDCVADIWSLGITALEMAEGKPPYGEIHPMRAIFMIPQKPPPSFREP 259
            |:|||||||     .:..||..:|:||||||||||||.:||..::|||||:|:||:..||..:. 
  Fly   199 PYWMAPEVIACDENPDATYDNRSDLWSLGITALEMAESQPPLCDLHPMRALFLIPRNSPPRLKS- 262

  Fly   260 DRWSTEFIDFVSKCLVKEPDDRATATELLEHEFIR----NAKHRSILKPMLEETCAIR--EQQRA 318
            .:||.:|..|:...|||:...|.....||:|.||:    :.:.|..||..::. |..|  |::|.
  Fly   263 KKWSKKFHGFIDTVLVKDYHQRPYTENLLKHGFIKDQPTDRQVRIQLKDHIDR-CKKRKQEKERE 326

  Fly   319 NRSFGGVLAASQAKSLATQENGMQQ-----HITDNAFMEDPGTLVPEKFGEYQ-----QSSASDA 373
            :..:.|.........||.:.:.:.|     .:..|......|.|..|:..::.     |:.|:.|
  Fly   327 DYRYSGSDNDDDEPQLAGEHSSIVQAPGGDTLRRNFQQIQEGRLAAEQQQQHHLMAQAQAQAAAA 391

  Fly   374 TMIAHAEQGVDEGTLGPGGLRNLSKAAAPAAASSAASPLDMPAVDSGTMVELESNLGTMVINSDS 438
            ...|.|:..:.:        :....|||.|||:.||......|..:                   
  Fly   392 HAAAQAQAQLQQ--------QQQQAAAAAAAAAHAAQQAQQAAQQA------------------- 429

  Fly   439 DDSTTAKNNDDQKPRNRYR----------PQFL------EHFDRKNAGDGRGDEKPIATEYSPAA 487
             .:...:.|...||.:|.:          ||.|      .|.:|           |:..  :|..
  Fly   430 -QAQQPQANRQPKPPSRQQVEEPGPPARPPQRLIVVPDPPHANR-----------PLPP--TPKC 480

  Fly   488 AEQQQQQQQQQQQQQQDEQHLASGANDLNNWEHNMEMQFQQISAINQYGLQQHQQQQQVLMAYPL 552
            .|...|..||||:..|            ||::.::..:..:.......|.|..|||.|       
  Fly   481 GEPAGQTPQQQQRNSQ------------NNFKPSLPPRRPEPQPQTAAGGQGSQQQAQ------- 526

  Fly   553 MNEQLIALNNQPNLLLSNAAPMGQQGIPAAAPAQPPPAYQNQHM 596
              .:....||:.:..||::......|..::.||...|...|.|:
  Fly   527 --PEAPPRNNRQSSGLSSSGGSASGGGGSSKPAAALPQQSNNHL 568

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hpoNP_001261092.1 STKc_MST1_2 38..293 CDD:132943 118/268 (44%)
S_TKc 42..293 CDD:214567 117/264 (44%)
Mst1_SARAH 608..655 CDD:288481
msnNP_524679.3 STKc_myosinIII_N_like 25..296 CDD:270785 119/271 (44%)
S_TKc 32..296 CDD:214567 117/264 (44%)
CNH 1183..1484 CDD:214481
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45438561
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR48015
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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