DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hpo and gck-2

DIOPT Version :9

Sequence 1:NP_001261092.1 Gene:hpo / 37247 FlyBaseID:FBgn0261456 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_504721.1 Gene:gck-2 / 179072 WormBaseID:WBGene00022603 Length:829 Species:Caenorhabditis elegans


Alignment Length:421 Identity:143/421 - (33%)
Similarity:219/421 - (52%) Gaps:84/421 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 PEKVFDIMYKLGEGSYGSVYKAVHKESSSIVAIKLVPVES-DLHEII-KEISIMQQCDSPYVVRY 100
            |...::::.::|.|:||.||||....|.|:.|:|:|.:|: |...:| :||.::::|..|.::.|
 Worm    11 PADDYELLQRVGSGTYGEVYKARDIRSDSLAAVKVVKLEAGDNFAVIQQEIMVIRECSHPNIIAY 75

  Fly   101 YGSYFKQYDLWICMEYCGAGSVSDIMRLRKKTLTEDEIATILSDTLQGLVYLHLRRKIHRDIKAA 165
            :|||.::..|||.|||||.||:.||..| ...|:|.:||.:..:||:||.|||...|||||||.|
 Worm    76 FGSYIRRDRLWIVMEYCGGGSLQDIYHL-TGPLSELQIAFVCRETLRGLNYLHNMGKIHRDIKGA 139

  Fly   166 NILLNTEGYAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEV--IEEI-GYDCVADIWSLGITAL 227
            ||||::.|..||||||||.|:|.|:.||.:.||||:||||||  :|:. ||....|:|:.||||:
 Worm   140 NILLSSSGDVKLADFGVAAQITATIGKRKSFIGTPYWMAPEVACVEKRGGYGMQCDVWATGITAI 204

  Fly   228 EMAEGKPPYGEIHPMRAIFMIPQK--PPPSFREPDRWSTEFIDFVSKCLVKEPDDRATATELL-E 289
            |:.|.:||..::|||:.::::.:.  .||..::..||:..|.|||.:||.|.|..|.:..:|| .
 Worm   205 ELGECQPPLFDLHPMQVLYLMTKSGYKPPHLKDKHRWTPLFHDFVRQCLTKNPKKRPSPEKLLTS 269

  Fly   290 HEFIRNAKHRSILKPMLEETCAIREQQRANRSFGGVLAASQAKSLATQENGMQQHITDNAFMEDP 354
            |.|:.                             |.|:|...:.|..:.||....:.|.      
 Worm   270 HPFVL-----------------------------GSLSARMTRDLLDKVNGAPTDVYDR------ 299

  Fly   355 GTLVPEKFGEYQQSSASDATMIAHAEQGVDEGTLGPGGLRNLSKAAAPAAASSAASP--LDMPA- 416
                       ...:..|.|   ..|..:|:               ||:..:..|:|  :.:|| 
 Worm   300 -----------MSKTVDDLT---EEESDMDD---------------APSLLTPDAAPIRIGLPAH 335

  Fly   417 -----VDSGTMVELESNLGTMVINSDSDDST 442
                 :|:..:.:|.|:..|   :|:||..|
 Worm   336 LNGLRLDARCLEQLSSSPNT---SSESDRRT 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hpoNP_001261092.1 STKc_MST1_2 38..293 CDD:132943 117/262 (45%)
S_TKc 42..293 CDD:214567 116/258 (45%)
Mst1_SARAH 608..655 CDD:288481
gck-2NP_504721.1 STKc_MAP4K3_like 14..273 CDD:270788 116/259 (45%)
S_TKc 15..273 CDD:214567 116/258 (45%)
CNH 483..804 CDD:214481
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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