DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rep and gdi2

DIOPT Version :9

Sequence 1:NP_477420.1 Gene:Rep / 37246 FlyBaseID:FBgn0026378 Length:511 Species:Drosophila melanogaster
Sequence 2:NP_955949.1 Gene:gdi2 / 323765 ZFINID:ZDB-GENE-030131-2485 Length:448 Species:Danio rerio


Alignment Length:496 Identity:123/496 - (24%)
Similarity:207/496 - (41%) Gaps:101/496 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 EQFDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFS-MDALCARLDQEVEPHSALR 70
            |::|::|:|||.||..::...|..||.|||:|.|.|||...:|.: ::.|..|......|     
Zfish     3 EEYDVIVLGTGLTECILSGIMSVKGKKVLHMDRNSYYGGESASITPLEDLFKRFSLPGSP----- 62

  Fly    71 NARYTWHSMEKESETDAQSWNRDSVLAKSRRFSLDLCPRILYAAGELVQLLIKSNICRYAEFRAV 135
                      .||....:.||            :||.|:.|.|.|:||::|:.:.:.||.:|:.:
Zfish    63 ----------PESMGKGRDWN------------VDLIPKSLMANGQLVRMLLITQVTRYLDFKVI 105

  Fly   136 DHVCMRHNGEIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACNDYGED----------------- 183
            :...:...|.|..||.:.::...:..:.:.|||...|||....::.|:                 
Zfish   106 EGSFVYKKGSIYKVPSTETEALASSLMGLFEKRRFRKFLVFVANFDENDPKTMEGVDPKKTTMRD 170

  Fly   184 -----KCNEDSLEFRGRTFLEYLQAQRVTEKISS-CVMQAIAMCGPSTSFEEGMQRTQRFLGSLG 242
                 ...:|.::|.|.....|    |..:.:.. |:              |.:.|.:.:..||.
Zfish   171 VYKKFDLGQDVIDFTGHALALY----RTDDYLDQPCI--------------ETINRIKLYSESLA 217

  Fly   243 RYGNTPFLFPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNSNEFLLSSAGKTLRAKNVV 307
            |||.:|:|:|:||.|||||.|.||.|:|||.|.|.:.:::|.:: |.....:.|.|:..|.|.:.
Zfish   218 RYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIVIE-NGKVVGVKSEGEIARCKQLT 281

  Fly   308 SAPGYTPVSKGIELKPHISRGLFISSSPLGNEELNKGGGGVNLLRLL--DNEGGR--EAFLIQLS 368
            ..|.|  :...:.....:.|.:.|.|.|:      |.....|..:::  .|:..|  :.::..:|
Zfish   282 CDPSY--IKDRVNKVGQVIRVICILSHPI------KNTSDANSCQIIIPQNQVNRKHDIYVCMIS 338

  Fly   369 HYTGACPEGLYIFHLTTPALSEDPASDLA-------------IFTSQLFDQ----SDAQIIFS-S 415
            :......:|.||..::|...:.||..::.             :..|.|:..    ||:||..| |
Zfish   339 YAHNVAAQGKYIAIVSTTVETNDPEKEIKPALDLLEPVEQKFVSISDLYSPTDVGSDSQIFISRS 403

  Fly   416 YFTIAAQSSKSPAAEHIYYTDPPTYELDYDAAIANARDIFG 456
            |.......:.....:.||.....| |.|:........||||
Zfish   404 YDATTHFETTCDDIKDIYKRMTGT-EFDFAEMERKKNDIFG 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RepNP_477420.1 NADB_Rossmann 4..397 CDD:304358 105/417 (25%)
gdi2NP_955949.1 GDI 1..436 CDD:279353 119/487 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5044
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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