DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rep and gdi-1

DIOPT Version :9

Sequence 1:NP_477420.1 Gene:Rep / 37246 FlyBaseID:FBgn0026378 Length:511 Species:Drosophila melanogaster
Sequence 2:NP_001041044.1 Gene:gdi-1 / 178402 WormBaseID:WBGene00001558 Length:459 Species:Caenorhabditis elegans


Alignment Length:450 Identity:113/450 - (25%)
Similarity:205/450 - (45%) Gaps:68/450 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LPEQFDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFSMDALCARLDQEVEPHSAL 69
            :.|::|.:|:|||..|..|:...|..||.|||:|.|.|||...:|.:      .|:|..|     
 Worm     1 MDEEYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGGESASLT------PLEQLYE----- 54

  Fly    70 RNARYTWHSMEKESETDAQSWNRDSVLAKSRRFSLDLCPRILYAAGELVQLLIKSNICRYAEFRA 134
                 .:|..:.:.:.:         :.:.|.:::||.|:.|.|.|.||:|||.:.:.||.||::
 Worm    55 -----KFHGPQAKPQQE---------MGRGRDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKS 105

  Fly   135 VDHVCMRHNGEIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACNDYGEDKCNEDS---LEFRGRT 196
            ::...:...|:|..||....:...|..:.:.|||...|||.....:.|:|  ||:   |:....|
 Worm   106 IEASFVVKGGKIYKVPADEMEALATSLMGMFEKRRFKKFLVWVQQFDENK--EDTWQGLDPHNST 168

  Fly   197 FLEYLQAQRVTEKISSCVMQAIAMC----GPSTSFEEGMQRTQRFLGSLGRYGNTPFLFPMYGCG 257
            ..:..:...:.|..:.....|:|:.    ..:..:...:::.:.:..||.|||.:|:|:|:||.|
 Worm   169 MQQVYEKFGLDENTADFTGHALALYRDDEHKNQPYAPAVEKIRLYSDSLARYGKSPYLYPLYGLG 233

  Fly   258 ELPQCFCRLCAVYGGIYCLKRAVDDIALDSNSNEFLLSSAGKTLRAKNVVSAPGYTPVSKGIELK 322
            ||||.|.||.|:|||.|.|.:.||:|.:: |.....:....:.:|.|.:...|.|  ....::..
 Worm   234 ELPQGFARLSAIYGGTYMLDKPVDEIVME-NGKAIGVKCGDEIVRGKQIYCDPSY--AKDRVKKT 295

  Fly   323 PHISRGLFISSSPLGN-------------EELNKGGGGVNLLRLLDNEGGREAFLIQLSHYTGAC 374
            ..:.|.:.:.:.|:.|             :::.:..|...:|........|:.::...|:.....
 Worm   296 GQVVRAICLLNHPIPNTNDAQSCQIIIPQKQVGRHYGKFIVLEKQRVAQKRDIYISCCSNTNMVT 360

  Fly   375 PEGLYIFHLTTPALSEDPASDLA-------------IFTSQLFDQSD----AQIIFS-SY 416
            |:|.|:..::|...:.:|.:::.             |..|.:::.||    :||..| ||
 Worm   361 PKGWYLAMVSTTVETANPEAEVLPGLQLLGAIAEKFIQISDVYEPSDLGSESQIFISQSY 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RepNP_477420.1 NADB_Rossmann 4..397 CDD:304358 104/411 (25%)
gdi-1NP_001041044.1 NADB_Rossmann 1..449 CDD:304358 112/449 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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