DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rep and Chml

DIOPT Version :9

Sequence 1:NP_477420.1 Gene:Rep / 37246 FlyBaseID:FBgn0026378 Length:511 Species:Drosophila melanogaster
Sequence 2:NP_067325.2 Gene:Chml / 12663 MGIID:101913 Length:621 Species:Mus musculus


Alignment Length:627 Identity:179/627 - (28%)
Similarity:296/627 - (47%) Gaps:155/627 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLDDLPEQFDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFSMDALCARLDQEVEP 65
            |.:.||.:||:|:||||..||.:|||.||.|:.|||:||..|||..|:|||...|.:.|....:.
Mouse     1 MAEKLPTEFDVVIIGTGLPESILAAACSRSGQRVLHVDSRSYYGGNWASFSFTGLQSWLKDYQQN 65

  Fly    66 HSALRNARYTWH----------SMEKESET-------------------DAQSWNRDS------- 94
            |.:......||.          |:.|:.||                   |.::..|.|       
Mouse    66 HDSEEGVTATWQDLIHETEEAISLRKKDETIQHTEVFCYASQDVEDSVQDTETLQRSSPLEASAT 130

  Fly    95 ----------------------------------------------------------------- 94
                                                                             
Mouse   131 PADSLDSASLPKERQSAYSTSYEVPSRHTEESDRELSLPSANVEDSLEKEKYCGDKTDMHTVSGE 195

  Fly    95 -------------------------VLAKSRRFSLDLCPRILYAAGELVQLLIKSNICRYAEFRA 134
                                     ::.:||||::||..:.||:.|.|:.||||||:.|||||:.
Mouse   196 DKGEHKLVVQDSIEQPKRNRITYSQMVKESRRFNIDLVSKPLYSQGSLIDLLIKSNVSRYAEFKN 260

  Fly   135 VDHVCMRHNGEIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACNDYGEDKCNEDSLEFRGRTFLE 199
            |..:.....|::..|||||:||||:|.|::||||:||||||.|.||  ::.:::..:|:..:|.:
Mouse   261 VTRILAFWEGKVEQVPCSRADVFNSKELSMVEKRMLMKFLTFCLDY--EQHSDEYQDFKQCSFSD 323

  Fly   200 YLQAQRVTEKISSCVMQAIAMCGPST-SFEEGMQRTQRFLGSLGRYGNTPFLFPMYGCGELPQCF 263
            ||:.:::|..:...::.:|||...|: :..:|:|.|:.||..|||:|||||:||:||.||:||||
Mouse   324 YLKTKKLTPNLQHFILHSIAMTSESSCTTLDGLQATKTFLQCLGRFGNTPFIFPLYGHGEIPQCF 388

  Fly   264 CRLCAVYGGIYCLKRAVDDIALDSNSN--EFLLSSAGKTLRAKNVVSAPGYTP--VSKGIELKPH 324
            ||:|||:||:|||:..|..:.:|.:|.  :.::.:.|:.:.|...:....|.|  ....::.| .
Mouse   389 CRMCAVFGGVYCLRHKVQCLVVDKDSGRCKGIIDAFGQRISANYFIVEDSYLPKETCSNVQYK-Q 452

  Fly   325 ISRGLFISSSPLGNEELNKGGGGVNLLRLLDNEGGREAF-LIQLSHYTGACPEGLYIFHLTTPAL 388
            |||.:.|:...:...:.::   .:::|.:...|.|..:. :::|...|..|.:..|:.|||..: 
Mouse   453 ISRAVLITDQSILKTDSDQ---QISILVVPPLEPGTTSVRVMELCSSTMTCMKDSYLVHLTCSS- 513

  Fly   389 SEDPASDLAIFTSQLF-DQSDAQ----------IIFSSYFTI-----AAQSSKSPAAEHIYYTDP 437
            |:....||.....||| .:::|:          ::::.||.:     .::||......::|....
Mouse   514 SKTAREDLEPVVKQLFIPEAEAEAGKDELRKPRLLWALYFNMRDSSGVSRSSYCGLPSNVYICSG 578

  Fly   438 PTYELDYDAAIANARDIFGKMFPDADFLPRAPDPEEIVVDGE 479
            |.:.|..:.|:..|..:|.::||..:|.|..|:||:|:.:.|
Mouse   579 PDWGLGSEHAVKQAETLFQEIFPSEEFCPPPPNPEDIIFEAE 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RepNP_477420.1 NADB_Rossmann 4..397 CDD:304358 154/524 (29%)
ChmlNP_067325.2 NADB_Rossmann 6..528 CDD:304358 154/528 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 113..171 3/57 (5%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167841036
Domainoid 1 1.000 219 1.000 Domainoid score I2628
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 253 1.000 Inparanoid score I3186
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54506
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004306
OrthoInspector 1 1.000 - - otm43642
orthoMCL 1 0.900 - - OOG6_103227
Panther 1 1.100 - - O PTHR11787
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1844
SonicParanoid 1 1.000 - - X3039
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1211.930

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