DRSC/TRiP Functional Genomics Resources

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Protein Alignment betaTub56D and TUB3

DIOPT Version :9

Sequence 1:NP_725896.1 Gene:betaTub56D / 37238 FlyBaseID:FBgn0284243 Length:456 Species:Drosophila melanogaster
Sequence 2:NP_013582.1 Gene:TUB3 / 854915 SGDID:S000004593 Length:445 Species:Saccharomyces cerevisiae


Alignment Length:428 Identity:175/428 - (40%)
Similarity:261/428 - (60%) Gaps:18/428 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 WEIISDEHGIDATGAYHGDSDLQL-----ERINVYYNEASGGKYVPRAVLVDLEPGTMDSVRSGP 89
            ||:.|.||||...|  |.:..|..     |..:.:::|...||:||||:.|||||..:|.||:|.
Yeast    21 WELYSLEHGIKEDG--HLEDGLSKPKGGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRTGR 83

  Fly    90 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGS 154
            |.::|.|:..:.|:..|.||:|:||||.|.|:||.|.:.:||.|:.||.||||..||||||||||
Yeast    84 FKELFHPEQLINGKEDAANNYARGHYTVGREIVDEVEERIRKMADQCDGLQGFLFTHSLGGGTGS 148

  Fly   155 GMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI 219
            |:|:||:..:..||..:....::|.|:|::|.:||||||..|:.|..:|:.|.|:.:||||:|||
Yeast   149 GLGSLLLENLSYEYGKKSKLEFAVYPAPQLSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDI 213

  Fly   220 CFRTLKLTTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTS 284
            |.|.|.::.|::.:||.|::..:|.||..|||.|.||.||.:...|:||:||:||.:..:||:.|
Yeast   214 CKRNLGISRPSFSNLNGLIAQVISSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYAPILS 278

  Fly   285 RGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSY 349
            :....:.:.:|.|:|...|:..|.|..|||..|:|:....::||.:..::|...:..::||.:..
Yeast   279 KKRATHESNSVSEITNACFEPGNQMVKCDPTKGKYMANCLLYRGDVVTRDVQRAVEQVKNKKTVQ 343

  Fly   350 FVEWIPNNVKTAVCDIPPRGLKMS--------ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHW 406
            .|:|.|...|..:|..||..:..|        ...:.|:|||.:.:|||.::|..|:.::||:||
Yeast   344 MVDWCPTGFKIGICYEPPSVIPSSELANVDRAVCMLSNTTAIADAWKRIDQKFDLMYAKRAFVHW 408

  Fly   407 YTGEGMDEMEFTEAESNMNDLVSEYQQYQEATADEDAE 444
            |.||||:|.|||||.   .||.:..:.|.|..||..||
Yeast   409 YVGEGMEEGEFTEAR---EDLAALERDYIEVGADSYAE 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
betaTub56DNP_725896.1 beta_tubulin 26..435 CDD:276956 169/417 (41%)
PLN00220 29..438 CDD:215107 171/420 (41%)
TUB3NP_013582.1 alpha_tubulin 2..436 CDD:276955 170/419 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5023
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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