DRSC/TRiP Functional Genomics Resources

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Protein Alignment betaTub56D and tubb4b

DIOPT Version :9

Sequence 1:NP_725896.1 Gene:betaTub56D / 37238 FlyBaseID:FBgn0284243 Length:456 Species:Drosophila melanogaster
Sequence 2:XP_012825219.1 Gene:tubb4b / 779904 XenbaseID:XB-GENE-969447 Length:474 Species:Xenopus tropicalis


Alignment Length:453 Identity:409/453 - (90%)
Similarity:418/453 - (92%) Gaps:29/453 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 FWEIISDEHGIDATGAYHGDSDLQLERINVYYNEA-----------------------------S 64
            |||:||||||||.||.|||||||||||||||||||                             :
 Frog    20 FWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGEWECRFCSVGGCWSSRIPGMPYILLPFA 84

  Fly    65 GGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 129
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
 Frog    85 GGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 149

  Fly   130 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 194
            ||||||||||||||||||||||||||||||||||||||||||||||:||||||||||||||||||
 Frog   150 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA 214

  Fly   195 TLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADL 259
            |||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||
 Frog   215 TLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADL 279

  Fly   260 RKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA 324
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
 Frog   280 RKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA 344

  Fly   325 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKR 389
            :||||||||||||||||:|||||||||||||||||||||||||||||||||||||||||||||||
 Frog   345 VFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKR 409

  Fly   390 ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATADEDAEFEEEQEAE 452
            ||||||||||||||||||||||||||||||||||||||||||||||:|||:|:.||||.:|.|
 Frog   410 ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFEEGEEEE 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
betaTub56DNP_725896.1 beta_tubulin 26..435 CDD:276956 397/434 (91%)
PLN00220 29..438 CDD:215107 399/437 (91%)
tubb4bXP_012825219.1 PLN00220 1..459 CDD:215107 400/438 (91%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 426 1.000 Domainoid score I604
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H68504
Inparanoid 1 1.050 883 1.000 Inparanoid score I393
OMA 1 1.010 - - QHG53784
OrthoDB 1 1.010 - - D259639at33208
OrthoFinder 1 1.000 - - FOG0000096
OrthoInspector 1 1.000 - - otm48463
Panther 1 1.100 - - LDO PTHR11588
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2834
SonicParanoid 1 1.000 - - X99
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.110

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