DRSC/TRiP Functional Genomics Resources

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Protein Alignment betaTub56D and Tube1

DIOPT Version :9

Sequence 1:NP_725896.1 Gene:betaTub56D / 37238 FlyBaseID:FBgn0284243 Length:456 Species:Drosophila melanogaster
Sequence 2:NP_082282.1 Gene:Tube1 / 71924 MGIID:1919174 Length:475 Species:Mus musculus


Alignment Length:459 Identity:143/459 - (31%)
Similarity:230/459 - (50%) Gaps:61/459 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 CFWEIISDEH-GIDATGAYHGDSDLQLERINVYYNE------ASGG--------KYVPRAVLVDL 77
            |||::...|| .::..|.|.       :.|:.::..      ..||        ....||||:|:
Mouse    19 CFWDLALREHAAVNQKGIYD-------DAISSFFRNVDTRAVGDGGSISKGRISSLKARAVLIDM 76

  Fly    78 EPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 142
            |.|.::.:..||...:|.....:...||:|||||.||...|....:.:|:.:||.||.|||||.|
Mouse    77 EEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGCLYREQILEKLRKSAEQCDCLQCF 141

  Fly   143 QLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDE 207
            .:.||:|||||||:||.|:..:.:|:|:......:|.||.: .|.:..|||:.|::.:|.|:.|.
Mouse   142 FIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSE-DDVITSPYNSMLAMKELNEHADC 205

  Fly   208 TYCIDNEALYDI---------------CFRTLKLTTPTYG-----------DLNHLVSLTMSGVT 246
            ...|||::|:||               ..:...|.|...|           .:|::|:..:..:|
Mouse   206 VLPIDNQSLFDIISKIDLVVNSGKLGSAVKPKSLITSNMGAVKKHHKKPFDAMNNIVANLLLSLT 270

  Fly   247 TCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAA 311
            :..||.|.||.||.::::|:||||:||:.:....||.:..........:.::....|...:.:..
Mouse   271 SSARFEGSLNMDLNEISMNLVPFPKLHYLVSSLTPLYTLADVNIPPRRLDQMFSDAFSKDHQLIQ 335

  Fly   312 CDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQN-KNSSYFVEWIPNNVKTAVCDIPPRGLKMSAT 375
            .||||..||..|.|.||.:   ::.:...||:. |.:..||.|.....||::|.:||.|...|..
Mouse   336 ADPRHSLYLACALIVRGNV---QISDLRRNIERLKPALQFVSWNQEGWKTSLCSVPPVGHSHSLL 397

  Fly   376 FIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG-EGMDEMEFTEAESNMNDLVSEYQQYQEATA 439
            .:.|:|.::..|..:.|:||.::::||.||.|.. :||:|..||||.|:::.|:.||       :
Mouse   398 ALANNTCVKPTFMELRERFTRLYKKKAHLHHYLQVDGMEESTFTEAVSSLSALIQEY-------S 455

  Fly   440 DEDA 443
            |.||
Mouse   456 DLDA 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
betaTub56DNP_725896.1 beta_tubulin 26..435 CDD:276956 140/449 (31%)
PLN00220 29..438 CDD:215107 139/451 (31%)
Tube1NP_082282.1 epsilon_tubulin 2..457 CDD:276959 140/455 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5023
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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