DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment betaTub56D and Tuba8

DIOPT Version :10

Sequence 1:NP_725896.1 Gene:betaTub56D / 37238 FlyBaseID:FBgn0284243 Length:456 Species:Drosophila melanogaster
Sequence 2:XP_017448333.3 Gene:Tuba8 / 500377 RGDID:1566041 Length:600 Species:Rattus norvegicus


Alignment Length:437 Identity:175/437 - (40%)
Similarity:262/437 - (59%) Gaps:24/437 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 WEIISDEHGIDATGAYHGDSDLQLERIN------VYYNEASGGKYVPRAVLVDLEPGTMDSVRSG 88
            ||:...||||.|.|.:    ..|..:||      .:::|...||:|||||:|||||..:|.||:|
  Rat   172 WELFCLEHGIQADGTF----GTQASKINDDDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAG 232

  Fly    89 PFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTG 153
            .:.|:|.|:..:.|:..|.||:|:||||.|.|.:|.|||.:||..::|..||||.:.||.|||||
  Rat   233 TYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTG 297

  Fly   154 SGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYD 218
            ||..:||:.::..:|..:....:::.|:|:||..||||||:.|:.|..:|::|..:.:||||:||
  Rat   298 SGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 362

  Fly   219 ICFRTLKLTTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT 283
            ||.|.|.:..|||.:||.|:|..:|.:|..|||.|.||.||.:...|:||:||:||.:..:||:.
  Rat   363 ICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIV 427

  Fly   284 SRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSS 348
            |.....:..|:|.|:|...|:..:.|..||||||:|:....::||.:..|:|:..:..|:.|.:.
  Rat   428 SAEKAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTI 492

  Fly   349 YFVEWIPNNVKTAVCDIPP--------RGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLH 405
            .||:|.|...|..:...||        ..::.:...:.|:|||.|.:.|:..:|..|:.::||:|
  Rat   493 QFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVH 557

  Fly   406 WYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATADEDAEFEEEQEAE 452
            ||.||||:|.||:||.   .||.:..:.|:|...|   .||||.|.|
  Rat   558 WYVGEGMEEGEFSEAR---EDLAALEKDYEEVGTD---SFEEENEGE 598

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
betaTub56DNP_725896.1 PLN00220 29..438 CDD:215107 168/421 (40%)
Tuba8XP_017448333.3 None

Return to query results.
Submit another query.