DRSC/TRiP Functional Genomics Resources

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Protein Alignment betaTub56D and tubb4a

DIOPT Version :9

Sequence 1:NP_725896.1 Gene:betaTub56D / 37238 FlyBaseID:FBgn0284243 Length:456 Species:Drosophila melanogaster
Sequence 2:NP_001032345.1 Gene:tubb4a / 394927 XenbaseID:XB-GENE-947407 Length:444 Species:Xenopus tropicalis


Alignment Length:425 Identity:407/425 - (95%)
Similarity:418/425 - (98%) Gaps:1/425 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 FWEIISDEHGIDATGAYHGDSDLQLERINVYYNEASGGKYVPRAVLVDLEPGTMDSVRSGPFGQI 93
            |||:||||||||.||.|||||||||||||||||||||||||||||||||||||||||||||||||
 Frog    20 FWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAVLVDLEPGTMDSVRSGPFGQI 84

  Fly    94 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGT 158
            ||||||||||||||||||||||||||||||||:||||||:|||||||||||||||||||||||||
 Frog    85 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVMDVVRKESESCDCLQGFQLTHSLGGGTGSGMGT 149

  Fly   159 LLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRT 223
            |||||||||||||||||:|||||||||||||||||||||||||||||||||||||||||||||||
 Frog   150 LLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRT 214

  Fly   224 LKLTTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQ 288
            ||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
 Frog   215 LKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQ 279

  Fly   289 QYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEW 353
            |||:||||||||||||:|||||||||||||||||||:||||||||||||||||:|||||||||||
 Frog   280 QYRSLTVPELTQQMFDSKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEW 344

  Fly   354 IPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFT 418
            |||||||||||||||||||:|||||||||||||||||||||||||||||||||||||||||||||
 Frog   345 IPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFT 409

  Fly   419 EAESNMNDLVSEYQQYQEATADEDAEFEEEQEAEV 453
            |||||||||||||||||:||| |:.|||||.|.||
 Frog   410 EAESNMNDLVSEYQQYQDATA-EEGEFEEEAEEEV 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
betaTub56DNP_725896.1 beta_tubulin 26..435 CDD:276956 393/405 (97%)
PLN00220 29..438 CDD:215107 395/408 (97%)
tubb4aNP_001032345.1 PLN00220 1..427 CDD:215107 394/406 (97%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 426 1.000 Domainoid score I604
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53784
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000096
OrthoInspector 1 1.000 - - otm48463
Panther 1 1.100 - - LDO PTHR11588
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2834
SonicParanoid 1 1.000 - - X99
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
99.050

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