DRSC/TRiP Functional Genomics Resources

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Protein Alignment betaTub56D and Tubd1

DIOPT Version :10

Sequence 1:NP_725896.1 Gene:betaTub56D / 37238 FlyBaseID:FBgn0284243 Length:456 Species:Drosophila melanogaster
Sequence 2:NP_001099296.1 Gene:Tubd1 / 287592 RGDID:1311967 Length:483 Species:Rattus norvegicus


Alignment Length:450 Identity:104/450 - (23%)
Similarity:184/450 - (40%) Gaps:96/450 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 YYNEASGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ-------SGAGNNWAKGHYT 116
            ::.|...|..|.||||:|:||..::...|    :..:...:.:||       .|:|||||.|:..
  Rat    50 FFREEENGVPVARAVLIDMEPKVINQTLS----KAAQSGRWKYGQHTSFCQKQGSGNNWAYGYSV 110

  Fly   117 EGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPS 181
            .|.:..:|::::::.|.|.||.|.||.:..|:.||||||:|..:..|::::|...:.....:.|.
  Rat   111 HGPKHEESIMNLIQTEVEKCDSLSGFFIIMSMAGGTGSGLGAFITQKLQDQYSSSLKMNQIIWPY 175

  Fly   182 PKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSLTMSGV- 245
             ...:.:|:.||:.|::..|..::|.....:|:.::.||.:.:.:...::.|||.:::..:..| 
  Rat   176 -GTGEVIVQNYNSILTLSHLYRSSDALLIHENDVVHKICAKRMNIKQISFRDLNRVLAHQLGSVF 239

  Fly   246 ------------------------------TTCL----RFPGQL--NADLRKLAVNMVPFPRLHF 274
                                          ..||    |.|..|  |.||.:   ::||.|....
  Rat   240 QPTHSEDSSFHYCRNPLVSGIVGPGLPHATNVCLVALYRRPMFLSTNGDLME---HLVPHPEFKM 301

  Fly   275 FMPGFAPLTSRGSQQYRALT----VPELTQQMFDAKNMMAACD---------------------P 314
            ......|..|..|..|...|    :..|.|.:.....|....|                     |
  Rat   302 LGVRNIPQMSAESLAYSTFTWAGLLKHLRQMLISRAKMEEGIDWQVRPPLSGLPPIGKASAHKEP 366

  Fly   315 RHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWI-PNNV----KTAVCDIPPRGL---K 371
            .....|....|.|||    ||....:. ..::::.:..|: |.:.    ||      ||..   :
  Rat   367 HFNTSLANLVILRGR----EVHSADVG-GFRDAALYTSWLEPADAFSVWKT------PRPFDKYE 420

  Fly   372 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 431
            .||..:.||..:.:....:..:...||..||::|.||..||:|.:|.::.:.:..:|:.|
  Rat   421 KSAALVSNSQLLVKPLDMVVGKAWNMFSSKAYIHQYTKFGMEEEDFLDSFTLLEQVVASY 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
betaTub56DNP_725896.1 PLN00220 29..438 CDD:215107 103/449 (23%)
Tubd1NP_001099296.1 delta_zeta_tubulin-like 2..482 CDD:276958 103/449 (23%)

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