DRSC/TRiP Functional Genomics Resources

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Protein Alignment betaTub56D and gtb1

DIOPT Version :9

Sequence 1:NP_725896.1 Gene:betaTub56D / 37238 FlyBaseID:FBgn0284243 Length:456 Species:Drosophila melanogaster
Sequence 2:NP_596147.1 Gene:gtb1 / 2540223 PomBaseID:SPBC32F12.04 Length:446 Species:Schizosaccharomyces pombe


Alignment Length:430 Identity:142/430 - (33%)
Similarity:248/430 - (57%) Gaps:20/430 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 FWEIISDEHGIDATGAYHGDSDLQLERINVYYNEASGGKYVPRAVLVDLEPGTMDSVRSGPFGQI 93
            ||:.:..||||...|.....:...::|.:|::.::...:|:|||:|:||||..::::.|..:|.:
pombe    21 FWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSL 85

  Fly    94 FRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGM 156
            :.|:|.:..::  |||||||.| |:....:.:.::|::.:||:..|.|:||.|.||:.||||||:
pombe    86 YNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGL 149

  Fly   157 GTLLISKIREEYPDRIMNTYSVVP-SPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 220
            |:.|:.::.:.||.:|:.||||.| |..|||.||:|||:.|::.:|..|.|....:||.||..|.
pombe   150 GSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIA 214

  Fly   221 FRTLKLTTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSR 285
            ...|....||:...|.|||..||..||.||:||.:|.||..:..:::|.||.||.:..:.|.|::
pombe   215 ADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQ 279

  Fly   286 GSQQYRAL---TVPELTQQMFDAKNMMAACDP-RHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKN 346
            ..::.:|:   ||.::.:::...||.|.:.:| :...::::..|.:|.....:|.:.:|.|:.:.
pombe   280 QVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERR 344

  Fly   347 SSYFVEWIPNNVKTAVCDIPP---RGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 408
            .:.|:.|.|.:::.|:....|   ...::|...:.|.|:|..||||..:|:..:.:|.|||..|.
pombe   345 YASFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLEQYK 409

  Fly   409 GEGMDEMEFTEAESNMN---DLVSEYQQYQEATADEDAEF 445
            .|.:.|.:..|.:|:.:   ||::||:      |.||..:
pombe   410 KEAIFEDDLNEFDSSRDVVADLINEYE------ACEDPNY 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
betaTub56DNP_725896.1 beta_tubulin 26..435 CDD:276956 139/418 (33%)
PLN00220 29..438 CDD:215107 139/421 (33%)
gtb1NP_596147.1 PLN00222 1..444 CDD:215108 142/430 (33%)
gamma_tubulin 3..435 CDD:276957 137/414 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5023
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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