DRSC/TRiP Functional Genomics Resources

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Protein Alignment betaTub56D and tbb-6

DIOPT Version :9

Sequence 1:NP_725896.1 Gene:betaTub56D / 37238 FlyBaseID:FBgn0284243 Length:456 Species:Drosophila melanogaster
Sequence 2:NP_506075.2 Gene:tbb-6 / 179680 WormBaseID:WBGene00006539 Length:426 Species:Caenorhabditis elegans


Alignment Length:409 Identity:235/409 - (57%)
Similarity:310/409 - (75%) Gaps:7/409 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 FWEIISDEHGIDATGAYHGDSDLQLERINVYYNEASGGKYVPRAVLVDLEPGTMDSVRSGPFGQI 93
            |||.||:|||:...|.|.||:..|||||..||.|..|.||||||:||||:|.:::.|||..:|::
 Worm    20 FWEYISEEHGLQTDGTYKGDNGSQLERITSYYKEMEGRKYVPRAILVDLDPESINYVRSTQYGKL 84

  Fly    94 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGT 158
            |.|:|.|.|:|||||||::|:|.:|||:||.||.|:|:|||:.|.|:||||.||||||||||:|:
 Worm    85 FDPENAVSGESGAGNNWSRGYYEQGAEIVDKVLSVIRREAEAADSLEGFQLIHSLGGGTGSGLGS 149

  Fly   159 LLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRT 223
            |||||:||||.|:.::|.|::||.||||||||||||.||:..|::|.||.:||||||::|||...
 Worm   150 LLISKLREEYSDKTLSTCSIIPSAKVSDTVVEPYNAILSMPHLMDNCDENFCIDNEAIFDICQYN 214

  Fly   224 LKL-TTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS 287
            ||| ...||||||||.||.:||:||..||.|.|..|:|||  |....|||||||..|||:..:|.
 Worm   215 LKLENRVTYGDLNHLASLALSGITTFQRFKGNLKTDIRKL--NTAGSPRLHFFMTSFAPVYGKGI 277

  Fly   288 QQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVE 352
            ...:|.::.:||||:.||||:| .|:...|::|:.|.|:||:.:.|:..||:::::|::.|..:|
 Worm   278 IDCQAFSISDLTQQVLDAKNIM-TCNHNQGKFLSSAIIYRGQQTEKKDAEQIISVENEDPSEMIE 341

  Fly   353 WIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 417
            .:|.:..|.|||||.||||.|||||.|||||||..||||:||..:|||||||||||   |:|.||
 Worm   342 SLPKSTNTDVCDIPSRGLKTSATFIANSTAIQEPLKRISKQFAGLFRRKAFLHWYT---MEESEF 403

  Fly   418 TEAESNMNDLVSEYQQYQE 436
            |:||:.:|||:||:|||::
 Worm   404 TDAENKVNDLISEFQQYEK 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
betaTub56DNP_725896.1 beta_tubulin 26..435 CDD:276956 234/406 (58%)
PLN00220 29..438 CDD:215107 235/409 (57%)
tbb-6NP_506075.2 PTZ00010 1..421 CDD:240228 234/406 (58%)
beta_tubulin 2..421 CDD:276956 234/406 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5023
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D259639at33208
OrthoFinder 1 1.000 - - FOG0000096
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11588
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.920

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