DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment betaTub56D and tuba1l

DIOPT Version :9

Sequence 1:NP_725896.1 Gene:betaTub56D / 37238 FlyBaseID:FBgn0284243 Length:456 Species:Drosophila melanogaster
Sequence 2:XP_031749744.1 Gene:tuba1l / 100144986 XenbaseID:XB-GENE-5845222 Length:486 Species:Xenopus tropicalis


Alignment Length:453 Identity:177/453 - (39%)
Similarity:267/453 - (58%) Gaps:16/453 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 HRVYDGVHGWPKPRSRAQTCFWEIISDEHGIDATGAYHGDS-DLQLERINVYYNEASGGKYVPRA 72
            ||....||...........| ||:...||||...|....|. ..:.|..:.::||.|||||||.|
 Frog    39 HREVISVHVGQAGVQIGNAC-WELYCLEHGILPDGRLLSDMFSEEDESFSTFFNETSGGKYVPHA 102

  Fly    73 VLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCD 137
            |.|||||..:|.||.|.:.::|.|:..:.|:..|.||:|:||||.|.|::||||:.:||.|:.|:
 Frog   103 VFVDLEPTVIDEVRKGSYRKLFHPEQLISGKEDAANNYARGHYTIGKEIIDSVLERIRKMADQCN 167

  Fly   138 CLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLV 202
            .||||.:.||.|||||||..:||:.::..||..:....:|:.|:||:|..||||||:.|:.|..:
 Frog   168 ALQGFLIFHSFGGGTGSGFSSLLMERLSVEYGRKSKLQFSIYPAPKMSTAVVEPYNSILTTHTTL 232

  Fly   203 ENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMV 267
            |::|..:.:||||:||||.|.|.:..||:.:||.|::..:|.:|..|||.|.||.||.:...|:|
 Frog   233 EHSDCAFLVDNEAIYDICQRNLDIECPTHTNLNRLIAQIVSSITASLRFDGALNVDLAEFQTNLV 297

  Fly   268 PFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSM 332
            ||||:||.:..:||..|.....:..|::.|:|...|:..|.|..|:||:|:|:....::||.:..
 Frog   298 PFPRIHFPVVSYAPFISAERAYHEKLSIAEITSACFEPANQMVKCNPRNGKYMACCMLYRGDVVP 362

  Fly   333 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMSATFIGNSTAIQELFKR 389
            |:|:..:.:|::|.:..||:|.|...|..:...||        ..::.:...:.|:|||.|.:..
 Frog   363 KDVNVAIASIKSKRTIQFVDWCPTGFKVGINYQPPTVVPGGDQAQMQRAVCMLSNTTAIAEAWAH 427

  Fly   390 ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATADEDAEFEEEQEAE 452
            :..:|..|:.::||:|||.||||:|.||:||..:|..|..:   |:|...|   ..|||::.|
 Frog   428 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKD---YEEIACD---YVEEEEDGE 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
betaTub56DNP_725896.1 beta_tubulin 26..435 CDD:276956 166/417 (40%)
PLN00220 29..438 CDD:215107 167/417 (40%)
tuba1lXP_031749744.1 alpha_tubulin 40..472 CDD:276955 170/435 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.