DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arl6 and ARFD1A

DIOPT Version :9

Sequence 1:NP_611421.1 Gene:Arl6 / 37236 FlyBaseID:FBgn0034446 Length:202 Species:Drosophila melanogaster
Sequence 2:NP_563652.1 Gene:ARFD1A / 839230 AraportID:AT1G02440 Length:190 Species:Arabidopsis thaliana


Alignment Length:199 Identity:65/199 - (32%)
Similarity:103/199 - (51%) Gaps:42/199 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 KDKMTILVLGLNNSGKSSIINHFKKSSEQTSIVVPTVGFMVEQFYIGMSGVSIKAID-------M 72
            :::..|::.||..:|||||::.| |:.|..:..:||||..||         |:|..|       |
plant    15 QEEARIVLFGLGGTGKSSIMHKF-KTGETLTTTMPTVGLNVE---------SVKYKDSNLCFWEM 69

  Fly    73 SGATRYR--NLWEHQFKNCHGIIYVIDSSDRMRFVVVKDELDLVLQH-----PDLCNRIVPILFY 130
            .|...|.  .||:|.|:...|::.|:||:.|.:....||.|::|:..     ||    ..|:|.|
plant    70 GGQQCYMWFPLWKHWFQEIAGLVLVVDSTGRDQIEETKDFLNVVIDEIQGSVPD----NAPVLVY 130

  Fly   131 GNKMDMEDSLSSVKIAAALRLENIKDK----PWHICSSSAISGEGLGEGVQWLIQQMRFAMLNNK 191
            |||.::..::|:.:|:..|.|.:::.|    .||:.||.|.||:||.||:.||:          |
plant   131 GNKHEVPGAMSASEISNKLDLTSLRKKNWQRNWHVQSSCAFSGDGLHEGLDWLL----------K 185

  Fly   192 NAAK 195
            ||.:
plant   186 NAER 189

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arl6NP_611421.1 Arl6 19..182 CDD:206722 62/180 (34%)
ARFD1ANP_563652.1 Gem1 15..>145 CDD:224025 45/143 (31%)
Arf_Arl 19..186 CDD:206644 62/190 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0070
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53833
OrthoDB 1 1.010 - - D1271528at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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