DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arl6 and trim23

DIOPT Version :9

Sequence 1:NP_611421.1 Gene:Arl6 / 37236 FlyBaseID:FBgn0034446 Length:202 Species:Drosophila melanogaster
Sequence 2:XP_005155659.1 Gene:trim23 / 767706 ZFINID:ZDB-GENE-060929-804 Length:576 Species:Danio rerio


Alignment Length:170 Identity:53/170 - (31%)
Similarity:90/170 - (52%) Gaps:7/170 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 KDKMTILVLGLNNSGKSSIINHFKKSSEQTSIVVPTVGFMVEQFYIGMSGVSIKAIDMSGATRYR 79
            |.::.::.|||:.:||::|:  ||...::....:||:||.||.  :....:.....|:.|..:.|
Zfish   404 KMEIRVVTLGLDGAGKTTIL--FKLKQDEFMQPIPTIGFNVET--VEYKNLKFTIWDVGGKHKLR 464

  Fly    80 NLWEHQFKNCHGIIYVIDSSDRMRFVVVKDELDLVLQHPDLCNRIVPILFYGNKMDMEDSLSSVK 144
            .||:|.:.|...:::||||..|.|.:....||..:|...:|  |...:|.:.||.|:..::|..:
Zfish   465 PLWKHYYLNTQAVVFVIDSCHRDRLMESHSELAKLLTEKEL--RDALLLIFANKQDVPGAVSVEE 527

  Fly   145 IAAALRLENI-KDKPWHICSSSAISGEGLGEGVQWLIQQM 183
            :...|.|..: ..:.|||....|.||.||.||:.||.:|:
Zfish   528 MTELLSLHKLCCGRSWHIQGCDARSGMGLHEGLDWLSRQL 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arl6NP_611421.1 Arl6 19..182 CDD:206722 51/163 (31%)
trim23XP_005155659.1 RING 33..76 CDD:214546
BBOX 127..170 CDD:237988
BBOX 175..221 CDD:197662
iSH2_PI3K_IA_R 228..372 CDD:304922
ARD1 408..576 CDD:206723 52/166 (31%)
Ras 408..567 CDD:278499 51/164 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0070
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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