DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arl6 and arfrp1

DIOPT Version :9

Sequence 1:NP_611421.1 Gene:Arl6 / 37236 FlyBaseID:FBgn0034446 Length:202 Species:Drosophila melanogaster
Sequence 2:XP_005166227.1 Gene:arfrp1 / 503602 ZFINID:ZDB-GENE-050227-14 Length:201 Species:Danio rerio


Alignment Length:185 Identity:54/185 - (29%)
Similarity:98/185 - (52%) Gaps:14/185 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LADLIK--IKKDKMTILVLGLNNSGKSSII----NHFKKSSE--QTSIVVPTVGFMVEQFYIGMS 63
            |:.|.|  .:||:..||:|||:|:||::.:    ..|.|:.:  ..|.:..|||..:....:|.:
Zfish     5 LSGLYKYMFQKDEYCILILGLDNAGKTTFLEQTKTRFSKNYKGMNLSKITTTVGLNIGTIDVGKA 69

  Fly    64 GVSIKAIDMSGATRYRNLWEHQFKNCHGIIYVIDSSDRMRFVVVKDELDLVLQHPDLCNRIVPIL 128
              .:...|:.|....::||:..:...||:||||||:|..|....|:..:.::....|  ..||:|
Zfish    70 --RLMFWDLGGQEELQSLWDKYYAESHGVIYVIDSTDEERLGESKNAFEKMISSEAL--EGVPLL 130

  Fly   129 FYGNKMDMEDSLS--SVKIAAALRLENIKDKPWHICSSSAISGEGLGEGVQWLIQ 181
            ...||.|:|:.||  .:|.|.:.....|..:...:...:|:||:|:.:|::|:::
Zfish   131 VLANKQDVENCLSVPDIKTAFSDCAPKIGKRDCLVQPCAALSGQGVNDGIEWMVK 185

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arl6NP_611421.1 Arl6 19..182 CDD:206722 49/171 (29%)
arfrp1XP_005166227.1 Arfrp1 19..186 CDD:206725 49/171 (29%)
Ras 20..189 CDD:278499 49/170 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1271528at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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