DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arl6 and arl5c

DIOPT Version :9

Sequence 1:NP_611421.1 Gene:Arl6 / 37236 FlyBaseID:FBgn0034446 Length:202 Species:Drosophila melanogaster
Sequence 2:NP_957140.1 Gene:arl5c / 393819 ZFINID:ZDB-GENE-040426-1866 Length:179 Species:Danio rerio


Alignment Length:181 Identity:65/181 - (35%)
Similarity:104/181 - (57%) Gaps:11/181 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGMLHNLADLIKIKKDK-MTILVLGLNNSGKSSIINHF-KKSSEQTSIVVPTVGFMVEQFYIGMS 63
            ||:|  .|.|:.:..|: ..::::||:|:||::|:..| .|.:.|||   ||:|..||:  |.:.
Zfish     1 MGLL--FAKLMTLFGDREHKVIIVGLDNAGKTTILYQFLTKEAVQTS---PTIGSNVEE--IAIK 58

  Fly    64 GVSIKAIDMSGATRYRNLWEHQFKNCHGIIYVIDSSDRMRFVVVKDELDLVLQHPDLCNRIVPIL 128
            .......|:.|....|..|...:.|...||.|:||:||.|..|.|:||..:|.|.||.|..|.:|
Zfish    59 KTRFLVWDIGGQESLRATWNSYYTNTEIIILVVDSTDRERLTVTKEELHRMLAHEDLQNASVLVL 123

  Fly   129 FYGNKMDMEDSLSSVKIAAALRLENIKDKPWHICSSSAISGEGLGEGVQWL 179
              .||.|||||:::.:|:.:|.|.::..:.||:.:..|::||||...:.|:
Zfish   124 --ANKQDMEDSMTAAEISQSLTLSSLTARSWHVQACCALTGEGLPASLDWM 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arl6NP_611421.1 Arl6 19..182 CDD:206722 59/162 (36%)
arl5cNP_957140.1 Arl5_Arl8 3..175 CDD:133353 63/179 (35%)
Ras 18..164 CDD:278499 55/152 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0070
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53833
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

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