DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arl6 and Arl5b

DIOPT Version :9

Sequence 1:NP_611421.1 Gene:Arl6 / 37236 FlyBaseID:FBgn0034446 Length:202 Species:Drosophila melanogaster
Sequence 2:NP_001015031.2 Gene:Arl5b / 364788 RGDID:1305569 Length:180 Species:Rattus norvegicus


Alignment Length:165 Identity:57/165 - (34%)
Similarity:96/165 - (58%) Gaps:8/165 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 ILVLGLNNSGKSSIINHFKKSS-EQTSIVVPTVGFMVEQFYIGMSGVSIKAIDMSGATRYRNLWE 83
            ::::||:|:||::|:..|..:. ..||   ||:|..||:  |.:........|:.|....|:.|.
  Rat    20 VIIVGLDNAGKTTILYQFLMNEVVHTS---PTIGSNVEE--IVVKNTHFLMWDIGGQESLRSSWN 79

  Fly    84 HQFKNCHGIIYVIDSSDRMRFVVVKDELDLVLQHPDLCNRIVPILFYGNKMDMEDSLSSVKIAAA 148
            ..:.|...||.|:||.||.|..:.|:||..:|.|.||  |...:|.:.||.|::..:::.:|:..
  Rat    80 TYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDL--RKAAVLIFANKQDLKGCMTAAEISKY 142

  Fly   149 LRLENIKDKPWHICSSSAISGEGLGEGVQWLIQQM 183
            |.|.:|:|.||||.|..|::||||.:|::|:..::
  Rat   143 LTLSSIRDHPWHIQSCCALTGEGLCQGLEWMTSRI 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arl6NP_611421.1 Arl6 19..182 CDD:206722 57/162 (35%)
Arl5bNP_001015031.2 Arl5_Arl8 4..176 CDD:133353 57/162 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0070
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53833
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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