DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arl6 and Arl4a

DIOPT Version :9

Sequence 1:NP_611421.1 Gene:Arl6 / 37236 FlyBaseID:FBgn0034446 Length:202 Species:Drosophila melanogaster
Sequence 2:NP_062059.1 Gene:Arl4a / 29308 RGDID:2152 Length:200 Species:Rattus norvegicus


Alignment Length:169 Identity:53/169 - (31%)
Similarity:88/169 - (52%) Gaps:18/169 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 ILVLGLNNSGKSSII-----NHFKKSSEQTSIVVPTVGFMVEQFYIGMSG---VSIKAIDMSGAT 76
            |::|||:.:||::::     |.|..:       |||.||..|:..:.:..   |:....|:.|..
  Rat    23 IVILGLDCAGKTTVLYRLQFNEFVNT-------VPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQE 80

  Fly    77 RYRNLWEHQFKNCHGIIYVIDSSDRMRFVVVKDELDLVLQHPDLCNRIVPILFYGNKMDMEDSLS 141
            :.|.||:...:...||::|:||.|..|....|.||..:.:..:  |:.||:|...||.|:.:|||
  Rat    81 KLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISE--NQGVPVLIVANKQDLRNSLS 143

  Fly   142 SVKIAAALRLENIKDK-PWHICSSSAISGEGLGEGVQWL 179
            ..:|...|.:..:... |||:..:.||.|:||.||::.|
  Rat   144 LSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKL 182

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arl6NP_611421.1 Arl6 19..182 CDD:206722 53/169 (31%)
Arl4aNP_062059.1 Arl4_Arl7 18..200 CDD:206719 53/169 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0070
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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