DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fak and Eph

DIOPT Version :10

Sequence 1:NP_001137718.1 Gene:Fak / 37233 FlyBaseID:FBgn0020440 Length:1500 Species:Drosophila melanogaster
Sequence 2:NP_524625.3 Gene:Eph / 43803 FlyBaseID:FBgn0025936 Length:1096 Species:Drosophila melanogaster


Alignment Length:978 Identity:226/978 - (23%)
Similarity:355/978 - (36%) Gaps:290/978 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ATSQPPPTKNEINSEEYLIHVHMPNKSFKAV--------RFNVKETVFHVIRRTVEDLGTDGRTP 62
            ||.:|||.:.:               |::.:        |||....|         |:.|:.::.
  Fly   191 ATREPPPWQTD---------------SYRLIARIAAGEGRFNQNSDV---------DINTEVKSI 231

  Fly    63 SIQRYACRMLNMITKEVIWLARSTSMQKVLSHILTPGCSNVDCP---NNQSELDEVLLEHGRRIT 124
            ::.:          |.|.:..|.   |.....:|......:.||   .|.:..:|.  ..||.||
  Fly   232 AVNK----------KGVYFAFRD---QGACISVLAVKVYYITCPAVTENFAHFNET--PTGREIT 281

  Fly   125 ----------DNR--------------VWRV-----ELRVRYVPNNIQELFEEDKATCFYYFNQV 160
                      ||.              .|.:     ..:..|.||...:...|.....|......
  Fly   282 IIEKQNGTCVDNAEPYETPTYLCKGDGKWTILTGGCRCKAGYEPNYTNKTCTECPLGTFKSPEVT 346

  Fly   161 KEDFIQANVTAIDTEVAVQLCCLGI-RHYFKNITVKAPDKKQHIDYIEKEIGFKS----FLPQ-- 218
            |......|..|..|......|..|. ||         |:..:|:..........:    |:.|  
  Fly   347 KCTPCPPNSNASKTGSPFCKCASGFYRH---------PNDGRHMPCYSPPAAPTNLTLLFVDQTS 402

  Fly   219 SVIATSKPKNLKKLIQVGYKKVYNYNDIEY---------------LTRFFDLLKNIYLTNFEQFS 268
            ::|:.|.|...:........|:| ::||.|               .|..|:..| |.|||.|..:
  Fly   403 AIISWSAPAKNESFSSETNSKIY-HSDIVYKIKCNICSPNVVYNPSTDTFNETK-ITLTNLEPVT 465

  Fly   269 VTLSSAWNISGILHVGPH---------IGISYQTHPQASLKNVAQFKDVVSIKTCT--------- 315
            ........|:.:.|:...         :.:|.......||.|:.  .|:..:||..         
  Fly   466 TYTVQIHAINSVSHINEFKRHSNESSLVAVSDIVFSNTSLLNIP--LDLNEVKTGQAEIVFTTES 528

  Fly   316 ----------------------------------------LPK---EKLSKSGENTTEPE----- 332
                                                    .||   :.::||..||.|.:     
  Fly   529 VLLSTVFNLRILAITNKDADLEWDKPVQSDFPLEFYEVRWFPKVELDAINKSALNTKETKAHIVG 593

  Fly   333 -LQN----FNCNCQKIKTQIKISASNNVEDLVITCNGINTAESIAD-----------LIDGYCRL 381
             |:|    |...|   ||.....:.:|    :|....:.:..|:.|           ::.|...|
  Fly   594 LLENTEYGFQVRC---KTNNGFGSYSN----MIYAQTLQSVGSVYDDSVQIRFIAGAIVTGVLFL 651

  Fly   382 LSKDLEFTIWHRETNASNED--SAKALPNDATLGSNKSTSSQGKPMLTDDYAEI--GLLEGEGDY 442
            :...:....:.|..:..:.|  |...||......||:..|....|::...:..:  .|......|
  Fly   652 VIFIIATVYFMRSKHQDDLDKKSTNHLPLPLDYASNEVNSMDTTPIVKKLHLNVTTPLFGNSRSY 716

  Fly   443 STP--------TVRNY--ELDRALITPSAKIGVGQFGDVYVGTYTLPKLGKGKNLAGNGKNSNSD 497
            ..|        .:|.:  |:|...||..|.||.|:||||..|...:|                  
  Fly   717 VDPHTYEDPNQAIREFAREIDANYITIEAIIGGGEFGDVCRGRLKIP------------------ 763

  Fly   498 QRNADSRPDVIQ---VAIKTCKANDDPEKTENFLAEAYIMQKFDHPHIIRLIGICS-VMPIWIVM 558
                   |:.:|   |||||.|.....:...:||.||.||.:||||::|.|.|:.: ..|:.|:.
  Fly   764 -------PNFVQDIDVAIKTLKPGSSEKARCDFLTEASIMGQFDHPNVIYLQGVVTRSNPVMIIT 821

  Fly   559 ELAKLGELRAYLKTNSERLSHGTLLKYCYQLSTALSYLESKKFVHRDIAARNVLVSSPTCVKLAD 623
            |..:.|.|..:|:.|..:.....|:.....:::.:|||....:||||:|||||||::....|:||
  Fly   822 EYMENGSLDTFLRVNDGKFQTLQLIVMLRGIASGMSYLSDMNYVHRDLAARNVLVNAQLICKIAD 886

  Fly   624 FGLSRWVSDQSYYHSTPTVALPIKWMSPESINFRRFTTASDVWMFGVCIWEILMLGVKPFQGVKN 688
            |||||.:.:.|..::|....:|::|.:||:|.||:||:|||||.:||.:||::..|.:|:....|
  Fly   887 FGLSREIENASDAYTTRGGKIPVRWTAPEAIAFRKFTSASDVWSYGVVLWEVMSYGERPYWNWSN 951

  Fly   689 SDVILKLENGERLPLPPNCPPRLYSLMSQCWAYEPLKRPNFKRIKETLHEILIEDSINSSETLKR 753
            .|||..:|.|.|||.|.:||..||.||..||..:...||.|..|..||            :.|.|
  Fly   952 QDVIKSIEKGYRLPAPMDCPEALYQLMLDCWQKQRTHRPTFASIVSTL------------DNLAR 1004

  Fly   754 EQRKVASMSWIGSDDIDIPPSKPSRVMHDPDITGLMPETTGLPQTYII----AQNPAVLAKLMME 814
            :.:.:.:             ::||            ||:.|   .:|:    .||..:...|.:|
  Fly  1005 QPQSLLT-------------TRPS------------PESDG---NHILDGQRGQNIFISTDLWLE 1041

  Fly   815 NQK 817
            :.|
  Fly  1042 HIK 1044

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FakNP_001137718.1 B41 24..267 CDD:214604 56/304 (18%)
FERM_B-lobe 152..257 CDD:271216 23/126 (18%)
FERM_C_FAK1 263..394 CDD:270011 30/212 (14%)
PTKc_FAK 450..744 CDD:133187 111/299 (37%)
Focal_AT 1250..1376 CDD:460992
EphNP_524625.3 EphR_LBD 85..260 CDD:198439 17/105 (16%)
FN3 387..476 CDD:238020 19/90 (21%)
FN3 536..623 CDD:238020 15/93 (16%)
EphA2_TM 640..738 CDD:464211 16/97 (16%)
PTKc_EphR 736..1002 CDD:270629 110/302 (36%)
SAM_1 1029..1092 CDD:425739 5/16 (31%)
Blue background indicates that the domain is not in the aligned region.

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