DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CalpA and capn13

DIOPT Version :9

Sequence 1:NP_001286613.1 Gene:CalpA / 37232 FlyBaseID:FBgn0012051 Length:843 Species:Drosophila melanogaster
Sequence 2:NP_001008025.1 Gene:capn13 / 493387 XenbaseID:XB-GENE-6045506 Length:763 Species:Xenopus tropicalis


Alignment Length:821 Identity:268/821 - (32%)
Similarity:397/821 - (48%) Gaps:137/821 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 GNLGEKSSSLGPYSEVQDYETILNSCLASGSLFEDPLFPASNESLQFSRRPDRH---IEWLRPHE 133
            |.:|......|     ||:::|..||.:...||||..||||..|:.....|...   |:|.||.|
 Frog    21 GTVGNPKKFKG-----QDFDSIRESCYSRRQLFEDETFPASVSSIGQKLLPKDQLLSIKWERPKE 80

  Fly   134 IAENPQFFVEGYSRFDVQQGELGDCWLLAATANLTQESNLFFRVIPAEQSFEENYAGIFHFRFWQ 198
            |..:.:..|:|.|.||:.||.|||||:|||...||........|||.:|.|...|||.|||||||
 Frog    81 IQSDARLLVDGASIFDMVQGYLGDCWVLAAVGALTLHQKFLDIVIPKDQEFNYKYAGAFHFRFWQ 145

  Fly   199 YGKWVDVIIDDRLPTYNGELMYMHSTEKNEFWSALLEKAYAKLHGSYEALKGGSTCEAMEDFTGG 263
            :|:||||:|||||||.||:.:.:|....||||..|||||||||.|||:.|..|...||:.||:||
 Frog   146 FGEWVDVVIDDRLPTLNGKYLSVHPRSDNEFWPTLLEKAYAKLRGSYQNLHWGYISEALVDFSGG 210

  Fly   264 VSEWYDLKEAPGNLFTILQKAAERNSMMGCSIEPDPNVTEAETPQGLIRGHAYSITKVCLIDIVT 328
            |...:||.:.|.:|..|:..||:..|:||.:..........|...||::||||::|....::.  
 Frog   211 VLVEFDLTKPPQDLRDIVIAAAKSGSLMGSNTPGGKQSGNPELQNGLVQGHAYTVTDATQVEY-- 273

  Fly   329 PNRQGKIPMIRMRNPWGNEAEWNGPWSDSSPEWRYIPEEQKAEIGLTFDRDGEFWMSFQDFLNHF 393
              :.|...::|:.|||| :.||||.|||::|:|..:..:.:.::.:. ..|||||||.||||.:|
 Frog   274 --KNGTEDLVRVWNPWG-KGEWNGRWSDNAPQWDRVRADVRQKLNVQ-KNDGEFWMSCQDFLQNF 334

  Fly   394 DRVEICNLSPDSLTEDQQNSGKRKWEMSMYEGEWTPGVTAGGCRNFLDTFWHNPQYIITLVDPDE 458
            ....|||.:|.....|   :.||.|:...|...|..|.||.||.:..| .|.|||::|::     
 Frog   335 SCASICNHTPAYFDFD---NPKRTWQTLTYFSRWVRGSTAAGCSSKED-LWRNPQFVISV----- 390

  Fly   459 EDEEGQ---CTVIVALMQ----KNRRSKRNMGMECLTIGFAIYSLNDRELENRPQGLNFFRYKSS 516
            .|.||.   ..|.|||||    :::.|:|.||     ||||:.    |......:|::...|  |
 Frog   391 SDSEGMKRGYNVTVALMQSLENEHKYSQRWMG-----IGFALC----RVASMGVKGISQQNY--S 444

  Fly   517 VGRSPHFINT-----REVCARFKLPPGHYLIVPSTFDPNEEGEFIIRVFSETQNNMEENDDHVGY 576
            ..::...|||     |||...|..|||.|:::|.|....:|.||::|:|.:|    :|.|.    
 Frog   445 AKQAMDVINTEIQISREVTRSFMAPPGTYVVIPFTESKGQESEFLLRIFLKT----KEIDK---- 501

  Fly   577 GGKADTITPGFPTPKPIDPQKEGLRRLFDSIAGKDMEVDWMELKRILDHSMRDDLPKP------- 634
                      |...|.:  .:||.:..:.|..|.               ..:|..|||       
 Frog   502 ----------FQDTKTV--PREGNQTFYPSNGGS---------------RYQDPKPKPRDDNQPM 539

  Fly   635 -----VVFNRFSNNMAFETQAAGPGDDGAGACGLLSLICGPFLKGTPFEEQLGMNDQSNKRLIGD 694
                 ...|:.|:::..|......|.||    ||           :.|...|.||.|..|.::..
 Frog   540 YPNETRARNQSSSSLPREESPYQYGSDG----GL-----------SDFSSSLSMNSQIPKAVLKK 589

  Fly   695 NPADGGPVT-------------------ANAIV--DETHG-----FSKDVCRSMVAMLDADKSGK 733
            ...|...:.                   .|.::  |:|..     |:.|.||.::.::|.:.:|:
 Frog   590 YQDDNYEMVFTRYCNKSSELYAEQLQRLLNEVIIKDQTFAGGRGDFTLDACRGILMLMDLNANGR 654

  Fly   734 LGFEEFETLLSEIAKWKAIFKVYDVENTGRVSGFQLREALNSAGYHLNNRVLNVLGHRYGSRDGK 798
            |..:||..|...:...|.:|:..|...||.:....|::|:..||..::|.::||:..||.:...|
 Frog   655 LSLQEFGRLWKRLNMCKDMFRSIDGNQTGFIDASGLKKAVQLAGLPISNALINVMVLRYANSSEK 719

  Fly   799 IAFDDFIMCAVKIKTYIDIFKERDTEKNETATF-TLEEWIE 838
            ::|.||:.|.::::|...:||  :..|:....: :.|||::
 Frog   720 LSFADFVCCMIRLETVTKVFK--NLSKDGRGVYLSGEEWMQ 758

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CalpANP_001286613.1 Peptidase_C2 104..400 CDD:279042 133/298 (45%)
Calpain_III 418..565 CDD:279416 54/158 (34%)
EFh 719..765 CDD:238008 13/45 (29%)
capn13NP_001008025.1 Peptidase_C2 48..341 CDD:366222 133/298 (45%)
Calpain_III 364..497 CDD:366446 52/153 (34%)
EFh_PEF_CAPN13_14 595..763 CDD:320070 39/166 (23%)
EF-hand motif 595..622 CDD:320070 1/26 (4%)
EF-hand motif 639..668 CDD:320070 8/28 (29%)
EF-hand motif 669..699 CDD:320070 8/29 (28%)
EF-hand motif 705..733 CDD:320070 9/27 (33%)
EF-hand motif 735..763 CDD:320070 6/26 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D704215at2759
OrthoFinder 1 1.000 - - FOG0000071
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10183
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X74
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.020

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