DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SdhA and SDH1-1

DIOPT Version :9

Sequence 1:NP_477210.1 Gene:SdhA / 37228 FlyBaseID:FBgn0261439 Length:661 Species:Drosophila melanogaster
Sequence 2:NP_201477.1 Gene:SDH1-1 / 836809 AraportID:AT5G66760 Length:634 Species:Arabidopsis thaliana


Alignment Length:612 Identity:427/612 - (69%)
Similarity:497/612 - (81%) Gaps:22/612 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 YPVVDHAYDAIVVGAGGAGLRAAFGLVAEGFRTAVITKLFPTRSHTIAAQGGINAALGNMEEDDW 116
            |.:|||.|||:||||||||||||.||...||.||.|||||||||||:|||||||||||||.||||
plant    43 YTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMSEDDW 107

  Fly   117 KWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTQDGKIYQRAFGGQSLKFGKGG 181
            :|||||||||||||||||||.||.||||||||||||||:|||||::|||||||||||||.|||||
plant   108 RWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEEGKIYQRAFGGQSLDFGKGG 172

  Fly   182 QAHRCCAVADRTGHSLLHTLYGQSLSYDCNYFVEYFALDLIF-EDGECRGVLALNLEDGTLHRFR 245
            ||:||...||||||:||||||||::.::..:|||||||||:. .||.|:||:|||:|||||||||
plant   173 QAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLLMASDGSCQGVIALNMEDGTLHRFR 237

  Fly   246 AKNTVIATGGYGRAFFSCTSAHTCTGDGTAMVARQGLPSQDLEFVQFHPTGIYGAGCLITEGCRG 310
            :..|::||||||||:||.||||||||||.|||||.|||.|||||||||||||||||||||||.||
plant   238 SSQTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGCLITEGSRG 302

  Fly   311 EGGYLINGNGERFMERYAPVAKDLASRDVVSRSMTIEIMEGRGAGPEKDHVYLQLHHLPPKQLAE 375
            |||.|.|..||||||||||.|||||||||||||||:||.||||.||.|||:||.|:||||:.|.|
plant   303 EGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPHKDHIYLHLNHLPPEVLKE 367

  Fly   376 RLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGVPTNYRGQVITIDKDGKDVIVPGLYAAGEAA 440
            |||||||||.||||||||:|||||||||||||||:||||.|:|:||..|..|.::|||.||||||
plant   368 RLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTIKGDDPDAVIPGLMAAGEAA 432

  Fly   441 SSSVHGANRLGANSLLDLVVFGRACAKTIAELNKPGAPAPTLKENAGEASVANLDKLRHANGQIT 505
            .:|||||||||||||||:||||||||..:||::|||.....|:::|||.::|.||:||::||.:.
plant   433 CASVHGANRLGANSLLDIVVFGRACANRVAEISKPGEKQKPLEKDAGEKTIAWLDRLRNSNGSLP 497

  Fly   506 TADLRLKMQKTMQHHAAVFRDGPILQDGVNKMKEIYKQFKDIKVVDRSLIWNSDLVETLELQNLL 570
            |:.:||.||:.||::|||||....|::|...:.:.::.|.|::|.|||:||||||:|||||:|||
plant   498 TSTIRLNMQRIMQNNAAVFRTQETLEEGCQLIDKAWESFGDVQVKDRSMIWNSDLIETLELENLL 562

  Fly   571 ANAQMTIVSAEARKESRGAHAREDFKVREDEYDFSKPLDGQQKKPMDQHWRKHTLS-WVCNDNGD 634
            .||.:|:.|||||||||||||||||..||         ||:        |.||||. |   ::..
plant   563 INASITMHSAEARKESRGAHAREDFTKRE---------DGE--------WMKHTLGYW---EDEK 607

  Fly   635 ITLDYRNVIDTTLDNEVSTVPPAIRSY 661
            :.||||.|...|||:|:.|.||..|.|
plant   608 VRLDYRPVHMDTLDDEIDTFPPKARVY 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdhANP_477210.1 PTZ00139 49..661 CDD:240286 426/610 (70%)
NADB_Rossmann 80..469 CDD:304358 312/389 (80%)
Succ_DH_flav_C 511..661 CDD:280980 75/150 (50%)
SDH1-1NP_201477.1 PLN00128 1..634 CDD:177739 426/610 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 668 1.000 Domainoid score I21
eggNOG 1 0.900 - - E1_COG1053
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3073
Inparanoid 1 1.050 864 1.000 Inparanoid score I62
OMA 1 1.010 - - QHG60640
OrthoDB 1 1.010 - - D606981at2759
OrthoFinder 1 1.000 - - FOG0002411
OrthoInspector 1 1.000 - - otm3279
orthoMCL 1 0.900 - - OOG6_100447
Panther 1 1.100 - - LDO PTHR11632
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1604
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

Return to query results.
Submit another query.