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Protein Alignment CG11961 and Folh1

DIOPT Version :9

Sequence 1:	NP_001246418.1	Gene:	CG11961 / 37221	FlyBaseID:	FBgn0034436	Length:	891	Species:	Drosophila melanogaster
Sequence 2:	NP_476533.2	Gene:	Folh1 / 85309	RGDID:	70963	Length:	752	Species:	Rattus norvegicus

Alignment Length:	423	Identity:	92/423 - (21%)
Similarity:	152/423 - (35%)	Gaps:	105/423 - (24%)

- Green bases have known domain annotations that are detailed below.

  Fly    47 QGNKIKWFWAPAFFGFWLLLYVTISIPACHRLPRPLTIQDEETHPDQFI-----AERAEKNLREL 106
            :|||:|........|  ::||   |.||.:.:|      ..:::||.:.     .:|.  |:..|
  Rat   212 RGNKVKNAQLAGAKG--IILY---SDPADYFVP------GVKSYPDGWNLPGGGVQRG--NVLNL 263

  Fly   107 VSLG-PRVVGSRQNEMA-------ALKMLS-----------QKMQKIRSGTA-------NDIEVD 145
            ...| |...|...||.|       |:.:.|           ||:.:...|:|       ..::|.
  Rat   264 NGAGDPLTPGYPANEYAYRHEFTEAVGLPSIPVHPIGYDDAQKLLEHMGGSAPPDSSWKGGLKVP 328

  Fly   146 VQVASGSYVHWSM------VNMYQSIQNI--VVKISPKNTNSTTYLLVNSHYDSVPAGPGAGDDG 202
            ..|..|...::|.      ::.|..:..|  |:...........|:::..|.|:...  |..|..
  Rat   329 YNVGPGFAGNFSKQKVKLHIHSYNKVTRIYNVIGTLKGAVEPDRYVILGGHRDAWVF--GGIDPQ 391

  Fly   203 SMVATMMEVLRVLA----KSDKPLKNPVVFLFNGAEENPLQAS------HAFITQHKWAKYCKAL 257
            |..|.:.|::|...    |..:| :..::|....|||..|..|      |:.:.|.:...|
  Rat   392 SGAAVVHEIVRTFGTLKKKGWRP-RRTILFASWDAEEFGLLGSTEWAEEHSRLLQERGVAY---- 451

  Fly   258 INLDSCGNGGREILFQSGPNHPWLMKNYRRAIKHPYASTMGEELFQH--------NFI------- 307
            ||.||...|...:.....|....|:.|..:.:..|.....|:.|:..        .||
  Rat   452 INADSSIEGNYTLRVDCTPLMHSLVYNLTKELPSPDEGFEGKSLYDSWKEKSPSTEFIGMPRISK 516

  Fly   308 -PSDTDFRIFRDHGSVPGLDMAYTYNGF--------VYHTRHDKAEIF-----PRGSFQHTGDNL 358
             .|..||.:|.....:......||.|..        :||:.::..|:.     |...:..|...:
  Rat   517 LGSGNDFEVFFQRLGIASGRARYTKNWKTNKVSSYPLYHSVYETYELVEKFYDPTFKYHLTVAQV 581

  Fly   359 L-ALVRQIANS---P-EIENSAKYAKGH--TIY 384
            . |:|.::|||   | :.::.|...|.|  |||
  Rat   582 RGAMVFELANSIVLPFDCQSYAVALKKHAETIY 614

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.