DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11906 and CG4820

DIOPT Version :10

Sequence 1:NP_611402.2 Gene:CG11906 / 37209 FlyBaseID:FBgn0034425 Length:634 Species:Drosophila melanogaster
Sequence 2:NP_001097748.1 Gene:CG4820 / 41344 FlyBaseID:FBgn0037876 Length:362 Species:Drosophila melanogaster


Alignment Length:125 Identity:36/125 - (28%)
Similarity:59/125 - (47%) Gaps:21/125 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   477 CHKCGDVF--TSKVFLDYHMH-LQNRGL--YICHKCREEFELQHQLDRHFQLHRKGINYHCNFCR 536
            |..||..|  ||.:    |:| |::.|.  :.|.:|.::....|.|.||...|.:| .|.|.||.
  Fly   224 CEHCGRQFKDTSNL----HVHLLRHTGTKPFECDQCHQKCYTLHLLRRHQLKHTEG-PYACTFCG 283

  Fly   537 LEFLSEAKLLAH----CKKLGHSPNDEPLISIDRSLSIVNCHV-----PRSSDYSRIVKS 587
            ||:.:.:..:.|    ||| |.:|..:..| |.:.....:|.|     .|:.::::.:.|
  Fly   284 LEYSTNSSRVRHEREACKK-GRAPQSKWEI-IKKGERTFHCEVCDLWFLRAGNFTQHINS 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11906NP_611402.2 None
CG4820NP_001097748.1 zf-AD 5..75 CDD:462262
SUF4-like 224..>279 CDD:411020 19/59 (32%)
C2H2 Zn finger 224..244 CDD:411020 9/23 (39%)
C2H2 Zn finger 224..244 CDD:275368 9/23 (39%)
C2H2 Zn finger 252..272 CDD:275368 6/19 (32%)
C2H2 Zn finger 279..297 CDD:275368 6/17 (35%)
C2H2 Zn finger 322..339 CDD:275368 3/16 (19%)
Blue background indicates that the domain is not in the aligned region.

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