DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tbrd-2 and GTE3

DIOPT Version :9

Sequence 1:NP_611401.2 Gene:tbrd-2 / 37207 FlyBaseID:FBgn0034423 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_177458.1 Gene:GTE3 / 843646 AraportID:AT1G73150 Length:461 Species:Arabidopsis thaliana


Alignment Length:658 Identity:112/658 - (17%)
Similarity:189/658 - (28%) Gaps:293/658 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LPNRVQPE---FIPHP-------------GMAGRYTNK--LHYFK--KHLLDEARKKKYALDFLE 57
            |..|::|:   |.|.|             |:.|...:|  :...|  .:||.:..|.|....|..
plant    77 LIKRLEPQGNNFAPVPNKKLKTANGGKKGGVHGAAADKGTVQILKSCNNLLTKLMKHKSGWIFNT 141

  Fly    58 PVDTEALMVPTYYTVIHRPMDIGTIVKRVQNNYYKSVNEAIADFKQIISNCFLFNRSGDVVYRKG 122
            |||...|.:..|:.:|..|||:||:..|:..:.|||..|...|.:...:|..|:|..|..||...
plant   142 PVDVVTLGLHDYHNIIKEPMDLGTVKTRLSKSLYKSPLEFAEDVRLTFNNAMLYNPVGHDVYHMA 206

  Fly   123 QMLEKFFHKKLRGMPSGPEVPCNRDPKAVGRPRTNAPSSAQTERKCRELLKKLQSITNQTDAMTR 187
            ::|...|.:|.                        .|...|.|.    |::|.|.:         
plant   207 EILLNLFEEKW------------------------VPLETQYEL----LIRKQQPV--------- 234

  Fly   188 NFFSNKWDSLQKKVDRQYFKSVNEFCLHVDGCFRKYHEPAKILYERVFNQPAAWCTSMNGNSSLE 252
                       :.:|                    :|.|.                         
plant   235 -----------RDID--------------------FHAPV------------------------- 243

  Fly   253 SALNAADLNELLAAAKLTVNSLMQCVQMPGSGEPLTAKSLVETFCDTLNKMINKMEAGQRNSPNP 317
             :.|..::..|                      ||.|                         |.|
plant   244 -STNTHNVEAL----------------------PLPA-------------------------PTP 260

  Fly   318 SSSKRQKMSPEQETDLVQGEFKPAMELLSGNEIDNLMAVSIESSDDEAIDASMRITDADRCATQK 382
            |      :||.....:|:.......|.::......::.|..|...:|| .|:..:|..::....:
plant   261 S------LSPPPPPKVVENRTLERAESMTNPVKPAVLPVVPEKLVEEA-SANRDLTFDEKRQLSE 318

  Fly   383 LFAKLPTNAMKEIIHMVQQIEGFSSENCGDLSFDVKGLATDTMIMMKSAVTKATRAHSKLKLKDM 447
            ....||.:.::.::.::::.....|:...::..|:..|..:|:..:...||:...:.||.|    
plant   319 DLQDLPYDKLEAVVQIIKKRTPELSQQDDEIELDIDSLDLETLWELFRFVTEYKESLSKKK---- 379

  Fly   448 QPSEKEGLQRALQSQLVNITRMLNKNRRRCGPLINFRNKNNTANNVVRKRATAPLTAKLKPLQAN 512
               |::||.....::                   :|.|..:.:|.:|....::.:|         
plant   380 ---EEQGLDSERDAE-------------------SFHNSVHESNTLVTGLESSKVT--------- 413

  Fly   513 VMAPQLGAGVVETHNLSDTSDDDVSAPVKLSAIGGTPMRNLPINSNPLQMQPIRSPPKLPHVVEL 577
                                                                     :|.||.  
plant   414 ---------------------------------------------------------ELGHVA-- 419

  Fly   578 QMSSSSSSESEMKSKSGRLSRSRSRSMSDTKLRPRSNSSASSRSNSSSSSGSNAGSSSGSRSRSS 642
                                         :.:|...|...||.|| ||||||.:| ||||.|.||
plant   420 -----------------------------STVRQEVNVGGSSSSN-SSSSGSGSG-SSGSDSDSS 453

  Fly   643 SSSSSSSN 650
            ...|.:.|
plant   454 GHESDTGN 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tbrd-2NP_611401.2 Bromo_gcn5_like 34..136 CDD:99941 33/105 (31%)
GTE3NP_177458.1 Bromo_plant1 120..217 CDD:99938 31/96 (32%)
BET 308..370 CDD:407211 8/61 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
21.860

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